├── .gitattributes ├── .gitignore ├── .readthedocs.yaml ├── LICENSE.txt ├── PKG-INFO ├── README.md ├── README.txt ├── doc ├── conf.py ├── exts │ └── animation.py ├── history.rst └── rtd_requirements.txt ├── examples ├── __init__.py ├── withDummy │ ├── __init__.py │ ├── logo_xrt.py │ └── xrt_demo.py ├── withRaycing │ ├── 00_xRayCalculator │ │ ├── __init__.py │ │ ├── calc_absorption.py │ │ ├── calc_bm.py │ │ ├── calc_carbon_contamination.py │ │ ├── calc_coated_mirror.py │ │ ├── calc_crystal.py │ │ ├── calc_crystal_dtheta.py │ │ ├── calc_crystal_rocking_curve.py │ │ ├── calc_mirror.py │ │ ├── calc_multilayer.py │ │ ├── calc_multilayer_E.py │ │ ├── calc_multilayer_theta.py │ │ ├── calc_slab.py │ │ ├── calc_transmittivity.py │ │ ├── calc_undulator.py │ │ ├── calc_undulator_power.py │ │ └── calc_undulator_tune.py │ ├── 01_SynchrotronSources │ │ ├── B-Hamed.xlsx │ │ ├── MAX-IV-IDs-Flux.py │ │ ├── NarrowMags_p1Tp2T_4col.txt │ │ ├── QEPU_HP_mode.txt │ │ ├── U32TaperedScan.py │ │ ├── __init__.py │ │ ├── bionano3.dc0 │ │ ├── fluxThroughAperture.py │ │ ├── my_arbitrary_field_test.py │ │ ├── synchrotronSources.py │ │ ├── thetaexafssc1an_zn_hgap_00002r2.fio.gz │ │ ├── undulator-rays-near-wave-filament.py │ │ ├── undulatorHamed.py │ │ ├── undulatorHamed_fromField.py │ │ ├── undulatorTapering.py │ │ ├── undulatorTapering_zmq.py │ │ └── undulatorVortex.py │ ├── 02_Balder_BL │ │ ├── BalderBL.py │ │ ├── BalderFlux.py │ │ ├── __init__.py │ │ ├── traceBalderBL.py │ │ ├── traceDCMBalderBL.py │ │ ├── traceFiltersBalderBL.py │ │ ├── traceMirrorPitchBalderBL.py │ │ ├── traceMirrorPitchBothBalderBL.py │ │ └── traceMirrorRBalderBL.py │ ├── 03_LaueMono │ │ ├── 01_bentLaueSCM.py │ │ ├── 02_bentLaueDCM_RC.py │ │ ├── 03_polychromatic_focus.py │ │ ├── 04_sagittal_bending.py │ │ └── __init__.py │ ├── 04_Lenses │ │ ├── __init__.py │ │ ├── crl_individual.py │ │ ├── crl_individual_3D.py │ │ └── crl_stack.py │ ├── 05_QWP │ │ ├── 01_collimated_BR.py │ │ ├── 02_collimated_LR.py │ │ ├── 03_collimated_BT.py │ │ ├── 04_collimated_LT.py │ │ ├── 05_convergent_BT.py │ │ ├── 06_convergent_LT.py │ │ ├── 07_convergent_LT_slit.py │ │ ├── 08_convergent_LT_bent.py │ │ ├── 09_convergent_LT_bentSph.py │ │ └── __init__.py │ ├── 06_AnalyzerBent1D │ │ ├── 01B_BentTT.py │ │ ├── 01B_SourceZCrystalThetaAlpha.py │ │ ├── 01L_SourceZCrystalThetaAlpha.py │ │ ├── 02_vonHamos.py │ │ ├── 02_vonHamosElliptical.py │ │ ├── __init__.py │ │ ├── flux-dE.py │ │ └── vonHamosPos.py │ ├── 07_AnalyzerBent2D │ │ ├── 01BD_SourceZCrystalThetaAlpha.py │ │ └── __init__.py │ ├── 08_CLAESS_BL │ │ ├── ClaessBL_N.py │ │ ├── __init__.py │ │ └── traceClaessBL_N.py │ ├── 09_Gratings │ │ ├── BraggFresnel.py │ │ ├── FZP.py │ │ ├── Grating.py │ │ ├── GratingFlexPES.py │ │ ├── __init__.py │ │ └── efficiency1-LEG.txt │ ├── 10_MultipleReflect │ │ ├── BentTaperedPolyCapillary.py │ │ ├── Cylinder.py │ │ ├── MontelMirror.py │ │ └── __init__.py │ ├── 11_Waves │ │ ├── 11.6 DiffractionOnApertures.py │ │ ├── IMP_1st_1p11.dat │ │ ├── IMP_2nd_1p11.dat │ │ ├── LEG_1st_1p85.dat │ │ ├── LEG_2nd_1p85.dat │ │ ├── LaguerreGaussianBeam_SiemensStar.py │ │ ├── MEG_1st_1p48.dat │ │ ├── MEG_2nd_1p48.dat │ │ ├── __init__.py │ │ ├── apex175p9.dat │ │ ├── coherentModePropagation.py │ │ ├── doubleSlitScan.py │ │ ├── slitscan.py │ │ ├── waveFZP.py │ │ ├── waveGrating.py │ │ └── waveMirrors.py │ ├── 12_Multilayer │ │ ├── BalderDMM.py │ │ └── traceDMM.py │ ├── 13_Warping │ │ ├── ExampleOfSlopeErrorMapToParametricMirror.py │ │ ├── __init__.py │ │ ├── mock_surface.dat │ │ └── warp.py │ ├── 14_SoftiMAX │ │ ├── Softi_CXIw1D.py │ │ ├── Softi_CXIw2D.py │ │ ├── Softi_STXMw1D.py │ │ ├── Softi_STXMw2D.py │ │ └── __init__.py │ ├── 15_XRD │ │ ├── P02_PD.xml │ │ ├── _images │ │ │ └── rings_on_detector.png │ │ └── xrd_mono.py │ ├── 16_ParametricOptimization │ │ └── 16.1_autoOptimization_detuning.py │ ├── _QookBeamlines │ │ ├── 1crystal.xml │ │ ├── 4crystals.xml │ │ ├── BioXAS_Main.xml │ │ ├── _images │ │ │ ├── ex03_glow.png │ │ │ ├── ex03_p01.png │ │ │ ├── ex03_p02.png │ │ │ ├── ex03_p03a.png │ │ │ ├── ex03_p03b.png │ │ │ ├── ex03_p03c.png │ │ │ ├── ex03_p03d.png │ │ │ ├── exp01_glow.png │ │ │ ├── exp01_p01.png │ │ │ ├── exp02_glow.png │ │ │ ├── exp02_p01.png │ │ │ ├── exp02_p02.png │ │ │ ├── exp04_glow.png │ │ │ ├── exp04_p01.png │ │ │ ├── exp04_p02.png │ │ │ ├── exp04_p03.png │ │ │ └── exp04_p04.png │ │ ├── lens1.xml │ │ ├── lens3.xml │ │ ├── testAlignment.xml │ │ └── testGrating.xml │ └── __init__.py └── withShadow │ ├── 00_02 │ ├── 00_simple.py │ ├── 01_filters.py │ ├── 02_VCM_stripes.py │ ├── __init__.py │ └── tmp0 │ │ ├── CLAESS01-norefl.ws │ │ ├── CVDdiamond.dat │ │ ├── Pt_refl.dat │ │ ├── Rh_refl.dat │ │ ├── Si111.rc │ │ ├── Si311.rc │ │ ├── Si_refl.dat │ │ ├── effic.01 │ │ ├── end.00 │ │ ├── end.01 │ │ ├── optax.01 │ │ ├── shadow-source.bat │ │ ├── shadow-source.sh │ │ ├── shadow-trace.bat │ │ ├── shadow-trace.sh │ │ ├── shadowvui.bat │ │ ├── start.00 │ │ ├── start.01 │ │ ├── systemfile.dat │ │ ├── xsh_bragg_tmp.inp │ │ ├── xsh_env_file.inp │ │ ├── xsh_epath_tmp.inp │ │ ├── xsh_input_source_tmp.inp │ │ ├── xsh_nphoton_tmp.inp │ │ ├── xsh_prerefl_tmp.inp │ │ └── xshwig.par │ ├── 03 │ ├── 03_DCM_energy.py │ ├── __init__.py │ └── tmp0 │ │ ├── CLAESS-noVFM.ws │ │ ├── CVDdiamond.dat │ │ ├── Rh_refl.dat │ │ ├── Si111.rc │ │ ├── Si311.rc │ │ ├── effic.01 │ │ ├── effic.02 │ │ ├── effic.03 │ │ ├── end.00 │ │ ├── end.01 │ │ ├── end.02 │ │ ├── end.03 │ │ ├── optax.01 │ │ ├── optax.02 │ │ ├── optax.03 │ │ ├── shadow-source.bat │ │ ├── shadow-source.sh │ │ ├── shadow-trace.bat │ │ ├── shadow-trace.sh │ │ ├── start.00 │ │ ├── start.01 │ │ ├── start.02 │ │ ├── start.03 │ │ ├── start_old.02 │ │ ├── systemfile.dat │ │ ├── xsh_env_file.inp │ │ ├── xsh_epath_tmp.inp │ │ ├── xsh_input_source_tmp.inp │ │ ├── xsh_mirinfo_tmp.inp │ │ ├── xsh_mirinfo_tmp.out │ │ ├── xsh_nphoton_tmp.inp │ │ └── xshwig.par │ ├── 04_06 │ ├── 04_dE_VCM_bending.py │ ├── 05_VFM_bending.py │ ├── 06_mirrors_pitch.py │ ├── __init__.py │ └── tmp0 │ │ ├── CLAESS.ws │ │ ├── CVDdiamond.dat │ │ ├── Rh_refl.dat │ │ ├── Si111.rc │ │ ├── effic.01 │ │ ├── effic.02 │ │ ├── effic.03 │ │ ├── effic.04 │ │ ├── end.00 │ │ ├── end.01 │ │ ├── end.02 │ │ ├── end.03 │ │ ├── end.04 │ │ ├── optax.01 │ │ ├── optax.02 │ │ ├── optax.03 │ │ ├── optax.04 │ │ ├── shadow-source.bat │ │ ├── shadow-source.sh │ │ ├── shadow-trace.bat │ │ ├── shadow-trace.sh │ │ ├── start.00 │ │ ├── start.01 │ │ ├── start.02 │ │ ├── start.03 │ │ ├── start.04 │ │ ├── start_old.02 │ │ ├── systemfile.dat │ │ ├── xsh_env_file.inp │ │ ├── xsh_epath_tmp.inp │ │ ├── xsh_input_source_tmp.inp │ │ ├── xsh_mirinfo_tmp.inp │ │ ├── xsh_mirinfo_tmp.out │ │ ├── xsh_nphoton_tmp.inp │ │ └── xshwig.par │ └── __init__.py ├── setup.py ├── tests ├── __init__.py ├── convexHull.py ├── kde.py ├── raycing │ ├── CXRO-Reflectivities │ │ ├── CSiO2_p_rough1.CXRO.gz │ │ ├── CSiO2_s_rough1.CXRO.gz │ │ ├── RhSi_p_rough2.CXRO.gz │ │ ├── RhSi_s_rough2.CXRO.gz │ │ ├── WSi300id0.CXRO.gz │ │ └── WSi300id6.CXRO.gz │ ├── IR │ │ ├── RefractiveIndexINFO_BK7.csv │ │ ├── one_plate_test.py │ │ └── wedge_diamond.xml │ ├── RemoteOpenCLCalculation │ │ ├── __init__.py │ │ ├── queue_device.py │ │ └── zmq_server.py │ ├── XOP-Reflectivities │ │ ├── Ag_absCoeff.xcrosssec.gz │ │ ├── Al_absCoeff.xcrosssec.gz │ │ ├── Au_absCoeff.xcrosssec.gz │ │ ├── Be_absCoeff.xcrosssec.gz │ │ ├── Diamond60mum.xpower.gz │ │ ├── Ni_absCoeff.xcrosssec.gz │ │ ├── Pt4mrad_p.xf1f2.gz │ │ ├── Pt4mrad_s.xf1f2.gz │ │ ├── Rh2mrad_p.xf1f2.gz │ │ ├── Rh2mrad_s.xf1f2.gz │ │ ├── ScCr_ML_reflection_REFLEC.npy │ │ ├── ScCr_ML_transmission_REFLEC.npy │ │ ├── Si05deg_p.xf1f2.gz │ │ ├── Si05deg_s.xf1f2.gz │ │ ├── SiO205deg_p.xf1f2.gz │ │ ├── SiO205deg_s.xf1f2.gz │ │ ├── W25A_10kev_p.mlayer.gz │ │ ├── W25A_10kev_s.mlayer.gz │ │ ├── WSi100_45A40.mlayer.gz │ │ ├── WSi45A04.mlayer.gz │ │ ├── WSi45_100A40.mlayer.gz │ │ ├── Zn_absCoeff.xcrosssec.gz │ │ └── mLScCr-spph.mlayer.gz │ ├── XOP-RockingCurves │ │ ├── bSi111_007mum_-5_p.xc.gz │ │ ├── bSi111_007mum_-5_p.xin.gz │ │ ├── bSi111_007mum_-5_s.xc.gz │ │ ├── bSi111_007mum_-5_s.xin.gz │ │ ├── bSi111_007mum_0_p.xc.gz │ │ ├── bSi111_007mum_0_p.xin.gz │ │ ├── bSi111_007mum_0_s.xc.gz │ │ ├── bSi111_007mum_0_s.xin.gz │ │ ├── bSi111_007mum_5_p.xc.gz │ │ ├── bSi111_007mum_5_p.xin.gz │ │ ├── bSi111_007mum_5_s.xc.gz │ │ ├── bSi111_007mum_5_s.xin.gz │ │ ├── bSi111_100mum_-5_p.xc.gz │ │ ├── bSi111_100mum_-5_p.xin.gz │ │ ├── bSi111_100mum_-5_s.xc.gz │ │ ├── bSi111_100mum_-5_s.xin.gz │ │ ├── bSi111_100mum_0_p.xc.gz │ │ ├── bSi111_100mum_0_p.xin.gz │ │ ├── bSi111_100mum_0_s.xc.gz │ │ ├── bSi111_100mum_0_s.xin.gz │ │ ├── bSi111_100mum_5_p.xc.gz │ │ ├── bSi111_100mum_5_p.xin.gz │ │ ├── bSi111_100mum_5_s.xc.gz │ │ ├── bSi111_100mum_5_s.xin.gz │ │ ├── bSi111_thick_-5_p.xc.gz │ │ ├── bSi111_thick_-5_p.xin.gz │ │ ├── bSi111_thick_-5_s.xc.gz │ │ ├── bSi111_thick_-5_s.xin.gz │ │ ├── bSi111_thick_0_p.xc.gz │ │ ├── bSi111_thick_0_p.xin.gz │ │ ├── bSi111_thick_0_s.xc.gz │ │ ├── bSi111_thick_0_s.xin.gz │ │ ├── bSi111_thick_5_p.xc.gz │ │ ├── bSi111_thick_5_p.xin.gz │ │ ├── bSi111_thick_5_s.xc.gz │ │ ├── bSi111_thick_5_s.xin.gz │ │ ├── bSi333_007mum_-5_p.xc.gz │ │ ├── bSi333_007mum_-5_p.xin.gz │ │ ├── bSi333_007mum_-5_s.xc.gz │ │ ├── bSi333_007mum_-5_s.xin.gz │ │ ├── bSi333_007mum_0_p.xc.gz │ │ ├── bSi333_007mum_0_p.xin.gz │ │ ├── bSi333_007mum_0_s.xc.gz │ │ ├── bSi333_007mum_0_s.xin.gz │ │ ├── bSi333_007mum_5_p.xc.gz │ │ ├── bSi333_007mum_5_p.xin.gz │ │ ├── bSi333_007mum_5_s.xc.gz │ │ ├── bSi333_007mum_5_s.xin.gz │ │ ├── bSi333_100mum_-5_p.xc.gz │ │ ├── bSi333_100mum_-5_p.xin.gz │ │ ├── bSi333_100mum_-5_s.xc.gz │ │ ├── bSi333_100mum_-5_s.xin.gz │ │ ├── bSi333_100mum_0_p.xc.gz │ │ ├── bSi333_100mum_0_p.xin.gz │ │ ├── bSi333_100mum_0_s.xc.gz │ │ ├── bSi333_100mum_0_s.xin.gz │ │ ├── bSi333_100mum_5_p.xc.gz │ │ ├── bSi333_100mum_5_p.xin.gz │ │ ├── bSi333_100mum_5_s.xc.gz │ │ ├── bSi333_100mum_5_s.xin.gz │ │ ├── bSi333_thick_-5_p.xc.gz │ │ ├── bSi333_thick_-5_p.xin.gz │ │ ├── bSi333_thick_-5_s.xc.gz │ │ ├── bSi333_thick_-5_s.xin.gz │ │ ├── bSi333_thick_0_p.xc.gz │ │ ├── bSi333_thick_0_p.xin.gz │ │ ├── bSi333_thick_0_s.xc.gz │ │ ├── bSi333_thick_0_s.xin.gz │ │ ├── bSi333_thick_5_p.xc.gz │ │ ├── bSi333_thick_5_p.xin.gz │ │ ├── bSi333_thick_5_s.xc.gz │ │ ├── bSi333_thick_5_s.xin.gz │ │ ├── btSi111_007mum_-5_p.xc.gz │ │ ├── btSi111_007mum_-5_p.xin.gz │ │ ├── btSi111_007mum_-5_s.xc.gz │ │ ├── btSi111_007mum_-5_s.xin.gz │ │ ├── btSi111_007mum_0_p.xc.gz │ │ ├── btSi111_007mum_0_p.xin.gz │ │ ├── btSi111_007mum_0_s.xc.gz │ │ ├── btSi111_007mum_0_s.xin.gz │ │ ├── btSi111_007mum_5_p.xc.gz │ │ ├── btSi111_007mum_5_p.xin.gz │ │ ├── btSi111_007mum_5_s.xc.gz │ │ ├── btSi111_007mum_5_s.xin.gz │ │ ├── btSi111_100mum_-5_p.xc.gz │ │ ├── btSi111_100mum_-5_p.xin.gz │ │ ├── btSi111_100mum_-5_s.xc.gz │ │ ├── btSi111_100mum_-5_s.xin.gz │ │ ├── btSi111_100mum_0_p.xc.gz │ │ ├── btSi111_100mum_0_p.xin.gz │ │ ├── btSi111_100mum_0_s.xc.gz │ │ ├── btSi111_100mum_0_s.xin.gz │ │ ├── btSi111_100mum_5_p.xc.gz │ │ ├── btSi111_100mum_5_p.xin.gz │ │ ├── btSi111_100mum_5_s.xc.gz │ │ ├── btSi111_100mum_5_s.xin.gz │ │ ├── btSi333_007mum_-5_p.xc.gz │ │ ├── btSi333_007mum_-5_p.xin.gz │ │ ├── btSi333_007mum_-5_s.xc.gz │ │ ├── btSi333_007mum_-5_s.xin.gz │ │ ├── btSi333_007mum_0_p.xc.gz │ │ ├── btSi333_007mum_0_p.xin.gz │ │ ├── btSi333_007mum_0_s.xc.gz │ │ ├── btSi333_007mum_0_s.xin.gz │ │ ├── btSi333_007mum_5_p.xc.gz │ │ ├── btSi333_007mum_5_p.xin.gz │ │ ├── btSi333_007mum_5_s.xc.gz │ │ ├── btSi333_007mum_5_s.xin.gz │ │ ├── btSi333_100mum_-5_p.xc.gz │ │ ├── btSi333_100mum_-5_p.xin.gz │ │ ├── btSi333_100mum_-5_s.xc.gz │ │ ├── btSi333_100mum_-5_s.xin.gz │ │ ├── btSi333_100mum_0_p.xc.gz │ │ ├── btSi333_100mum_0_p.xin.gz │ │ ├── btSi333_100mum_0_s.xc.gz │ │ ├── btSi333_100mum_0_s.xin.gz │ │ ├── btSi333_100mum_5_p.xc.gz │ │ ├── btSi333_100mum_5_p.xin.gz │ │ ├── btSi333_100mum_5_s.xc.gz │ │ ├── btSi333_100mum_5_s.xin.gz │ │ ├── graphite002_mosaic04_03kev.xc.gz │ │ ├── graphite002_mosaic04_08kev.xc.gz │ │ ├── graphite002_mosaic04_17kev.xc.gz │ │ ├── lSi111_007mum_-5_p.xc.gz │ │ ├── lSi111_007mum_-5_p.xin.gz │ │ ├── lSi111_007mum_-5_s.xc.gz │ │ ├── lSi111_007mum_-5_s.xin.gz │ │ ├── lSi111_007mum_0_p.xc.gz │ │ ├── lSi111_007mum_0_p.xin.gz │ │ ├── lSi111_007mum_0_s.xc.gz │ │ ├── lSi111_007mum_0_s.xin.gz │ │ ├── lSi111_007mum_5_p.xc.gz │ │ ├── lSi111_007mum_5_p.xin.gz │ │ ├── lSi111_007mum_5_s.xc.gz │ │ ├── lSi111_007mum_5_s.xin.gz │ │ ├── lSi111_100mum_-5_p.xc.gz │ │ ├── lSi111_100mum_-5_p.xin.gz │ │ ├── lSi111_100mum_-5_s.xc.gz │ │ ├── lSi111_100mum_-5_s.xin.gz │ │ ├── lSi111_100mum_0_p.xc.gz │ │ ├── lSi111_100mum_0_p.xin.gz │ │ ├── lSi111_100mum_0_s.xc.gz │ │ ├── lSi111_100mum_0_s.xin.gz │ │ ├── lSi111_100mum_5_p.xc.gz │ │ ├── lSi111_100mum_5_p.xin.gz │ │ ├── lSi111_100mum_5_s.xc.gz │ │ ├── lSi111_100mum_5_s.xin.gz │ │ ├── lSi333_007mum_-5_p.xc.gz │ │ ├── lSi333_007mum_-5_p.xin.gz │ │ ├── lSi333_007mum_-5_s.xc.gz │ │ ├── lSi333_007mum_-5_s.xin.gz │ │ ├── lSi333_007mum_0_p.xc.gz │ │ ├── lSi333_007mum_0_p.xin.gz │ │ ├── lSi333_007mum_0_s.xc.gz │ │ ├── lSi333_007mum_0_s.xin.gz │ │ ├── lSi333_007mum_5_p.xc.gz │ │ ├── lSi333_007mum_5_p.xin.gz │ │ ├── lSi333_007mum_5_s.xc.gz │ │ ├── lSi333_007mum_5_s.xin.gz │ │ ├── lSi333_100mum_-5_p.xc.gz │ │ ├── lSi333_100mum_-5_p.xin.gz │ │ ├── lSi333_100mum_-5_s.xc.gz │ │ ├── lSi333_100mum_-5_s.xin.gz │ │ ├── lSi333_100mum_0_p.xc.gz │ │ ├── lSi333_100mum_0_p.xin.gz │ │ ├── lSi333_100mum_0_s.xc.gz │ │ ├── lSi333_100mum_0_s.xin.gz │ │ ├── lSi333_100mum_5_p.xc.gz │ │ ├── lSi333_100mum_5_p.xin.gz │ │ ├── lSi333_100mum_5_s.xc.gz │ │ ├── lSi333_100mum_5_s.xin.gz │ │ ├── ltSi111_007mum_-5_p.xc.gz │ │ ├── ltSi111_007mum_-5_p.xin.gz │ │ ├── ltSi111_007mum_-5_s.xc.gz │ │ ├── ltSi111_007mum_-5_s.xin.gz │ │ ├── ltSi111_007mum_0_p.xc.gz │ │ ├── ltSi111_007mum_0_p.xin.gz │ │ ├── ltSi111_007mum_0_s.xc.gz │ │ ├── ltSi111_007mum_0_s.xin.gz │ │ ├── ltSi111_007mum_5_p.xc.gz │ │ ├── ltSi111_007mum_5_p.xin.gz │ │ ├── ltSi111_007mum_5_s.xc.gz │ │ ├── ltSi111_007mum_5_s.xin.gz │ │ ├── ltSi111_100mum_-5_p.xc.gz │ │ ├── ltSi111_100mum_-5_p.xin.gz │ │ ├── ltSi111_100mum_-5_s.xc.gz │ │ ├── ltSi111_100mum_-5_s.xin.gz │ │ ├── ltSi111_100mum_0_p.xc.gz │ │ ├── ltSi111_100mum_0_p.xin.gz │ │ ├── ltSi111_100mum_0_s.xc.gz │ │ ├── ltSi111_100mum_0_s.xin.gz │ │ ├── ltSi111_100mum_5_p.xc.gz │ │ ├── ltSi111_100mum_5_p.xin.gz │ │ ├── ltSi111_100mum_5_s.xc.gz │ │ ├── ltSi111_100mum_5_s.xin.gz │ │ ├── ltSi333_007mum_-5_p.xc.gz │ │ ├── ltSi333_007mum_-5_p.xin.gz │ │ ├── ltSi333_007mum_-5_s.xc.gz │ │ ├── ltSi333_007mum_-5_s.xin.gz │ │ ├── ltSi333_007mum_0_p.xc.gz │ │ ├── ltSi333_007mum_0_p.xin.gz │ │ ├── ltSi333_007mum_0_s.xc.gz │ │ ├── ltSi333_007mum_0_s.xin.gz │ │ ├── ltSi333_007mum_5_p.xc.gz │ │ ├── ltSi333_007mum_5_p.xin.gz │ │ ├── ltSi333_007mum_5_s.xc.gz │ │ ├── ltSi333_007mum_5_s.xin.gz │ │ ├── ltSi333_100mum_-5_p.xc.gz │ │ ├── ltSi333_100mum_-5_p.xin.gz │ │ ├── ltSi333_100mum_-5_s.xc.gz │ │ ├── ltSi333_100mum_-5_s.xin.gz │ │ ├── ltSi333_100mum_0_p.xc.gz │ │ ├── ltSi333_100mum_0_p.xin.gz │ │ ├── ltSi333_100mum_0_s.xc.gz │ │ ├── ltSi333_100mum_0_s.xin.gz │ │ ├── ltSi333_100mum_5_p.xc.gz │ │ ├── ltSi333_100mum_5_p.xin.gz │ │ ├── ltSi333_100mum_5_s.xc.gz │ │ └── ltSi333_100mum_5_s.xin.gz │ ├── __init__.py │ ├── info_opencl.py │ ├── laguerre_hermite_gaussian_beam.py │ ├── misc │ │ └── bessy.dc0.gz │ ├── read_NOM_maps.py │ ├── test_asymmetric_xtal.py │ ├── test_backcattering_xtal_Shvydko.py │ ├── test_coherent_fraction_stack.py │ ├── test_crystals.py │ ├── test_ellipse_2.py │ ├── test_ellipsoid_tube_mirror.py │ ├── test_hyperboloid_tube_mirror.py │ ├── test_laue_bent.py │ ├── test_materials.py │ ├── test_mosaic_xtal.py │ ├── test_mosaic_xtal_thin.py │ ├── test_multilayer_transmission.py │ ├── test_oes.py │ ├── test_param_mirror.py │ ├── test_polygonal_aperture.py │ ├── test_pytte.py │ ├── test_sources.py │ ├── test_undulator_convergence.py │ ├── test_undulator_on_mesh.py │ └── test_undulator_size.py └── speed │ ├── 1_SourceZCrystalThetaAlpha_speed.py │ ├── 2_synchrotronSources_speed.py │ ├── 3_Softi_CXIw2D_speed.py │ └── __init__.py └── xrt ├── __init__.py ├── backends ├── __init__.py ├── dummy.py ├── raycing │ ├── OE.cl │ ├── __init__.py │ ├── apertures.py │ ├── coherence.py │ ├── data │ │ ├── AtomicData.dat │ │ ├── BrCo.npz │ │ ├── Chantler.npz │ │ ├── Henke.npz │ │ └── f0_xop.dat │ ├── diffract.cl │ ├── materials.cl │ ├── materials.py │ ├── materials_compounds.py │ ├── materials_crystals.py │ ├── materials_elemental.py │ ├── modes.py │ ├── myopencl.py │ ├── oes.py │ ├── oes_base.py │ ├── physconsts.py │ ├── pyTTE_x │ │ ├── __init__.py │ │ ├── crystal_vectors.py │ │ ├── deformation.py │ │ ├── elastic_tensors.py │ │ ├── legacy.py │ │ ├── pyTTE.py │ │ ├── pyTTE_rkpy.py │ │ ├── pyTTE_rkpy_qt.py │ │ ├── quantity.py │ │ ├── rotation_matrix.py │ │ ├── ttcrystal.py │ │ └── ttscan.py │ ├── run.py │ ├── screens.py │ ├── sources.py │ ├── sources_beams.py │ ├── sources_geoms.py │ ├── sources_legacy.py │ ├── sources_sybase.py │ ├── sources_synchr.py │ ├── stages.py │ ├── undulator.cl │ ├── waves.py │ ├── xrt_complex_double.cl │ └── xrt_complex_float.cl └── shadow.py ├── gui ├── __init__.py ├── commons │ ├── __init__.py │ ├── _images │ │ ├── 1-LEG_profile-adhoc.png │ │ ├── 1-LEG_profile-default.png │ │ ├── ePos=0.png │ │ ├── ePos=1.png │ │ ├── ePos=2.png │ │ ├── ex03_glow.png │ │ ├── ex03_p01.png │ │ ├── ex03_p02.png │ │ ├── ex03_p03a.png │ │ ├── ex03_p03b.png │ │ ├── ex03_p03c.png │ │ ├── ex03_p03d.png │ │ ├── filterFootprint2_I400mum.png │ │ ├── filterFootprint2_I400mum_norm1.png │ │ ├── filterFootprint2_I400mum_norm2.png │ │ ├── invertColorMap=0_negative=0.png │ │ ├── invertColorMap=0_negative=1.png │ │ ├── invertColorMap=1_negative=0.png │ │ ├── invertColorMap=1_negative=1.png │ │ ├── negative=1+fullNegative.png │ │ ├── offset0.png │ │ ├── offset5000.png │ │ ├── outline00.png │ │ ├── outline05.png │ │ ├── outline10.png │ │ ├── qookSplash2.gif │ │ ├── qookTutor01.png │ │ ├── qookTutor02.png │ │ ├── qookTutor03.png │ │ ├── qookTutor04.png │ │ ├── qookTutor05.png │ │ ├── qookTutor06.png │ │ ├── qookTutor07.png │ │ ├── qookTutor08.png │ │ ├── qookTutor09.png │ │ ├── qookTutor10.png │ │ └── qookTutor11.png │ ├── _themes │ │ └── qook │ │ │ ├── layout.html │ │ │ ├── page.html │ │ │ ├── static │ │ │ ├── default.css_t │ │ │ ├── jquery.js │ │ │ ├── math_config_win32.js │ │ │ └── utils.js │ │ │ └── theme.conf │ ├── conf.py │ ├── ext.py │ ├── gl.py │ └── qt.py ├── xrtBentXtal.py ├── xrtGlow │ ├── __init__.py │ ├── _icons │ │ └── icon-GLow.ico │ └── notes.py ├── xrtQook │ ├── __init__.py │ ├── _icons │ │ ├── 3dg_256.png │ │ ├── GPU4.png │ │ ├── add1.png │ │ ├── add2.png │ │ ├── add3.png │ │ ├── add4.png │ │ ├── add5.png │ │ ├── add6.png │ │ ├── dialog-information.png │ │ ├── dialog-question.png │ │ ├── eyeglasses7_128.png │ │ ├── filenew.png │ │ ├── fileopen.png │ │ ├── filesave.png │ │ ├── filesaveas.png │ │ ├── home.png │ │ ├── index.txt │ │ ├── light_bulb.png │ │ ├── logo-xrtQt.png │ │ ├── pythonscript.png │ │ ├── pythonscriptsave.png │ │ ├── pythonscriptsaveas.png │ │ ├── readme.png │ │ ├── run.png │ │ ├── xbcc.ico │ │ ├── xbcc.png │ │ └── xrQt1.ico │ └── tutorial.py ├── xrtQook2 │ ├── __init__.py │ ├── _icons │ │ ├── GPU4.png │ │ ├── add1.png │ │ ├── add2.png │ │ ├── add3.png │ │ ├── add4.png │ │ ├── add5.png │ │ ├── add6.png │ │ ├── dialog-information.png │ │ ├── dialog-question.png │ │ ├── eyeglasses7_128.png │ │ ├── filenew.png │ │ ├── fileopen.png │ │ ├── filesave.png │ │ ├── filesaveas.png │ │ ├── home.png │ │ ├── index.txt │ │ ├── light_bulb.png │ │ ├── logo-xrtQt.png │ │ ├── pythonscript.png │ │ ├── pythonscriptsave.png │ │ ├── pythonscriptsaveas.png │ │ ├── readme.png │ │ ├── run.png │ │ └── xrQt1.ico │ └── tutorial.py ├── xrtQookStart.py └── xrtQookStart.pyw ├── kde.py ├── multipro.py ├── plotter.py ├── runner.py ├── version.py └── 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