├── .gitignore ├── .travis.yml ├── LICENSE ├── README.md ├── gsea_api ├── __init__.py ├── expression_set.py ├── gsea │ ├── __init__.py │ ├── base.py │ ├── cuda.py │ ├── exceptions.py │ ├── java.py │ ├── python.py │ └── test_gsea_java.py ├── molecular_signatures_db.py ├── paths.py ├── py.typed ├── requirements.txt └── streams.py ├── requirements.txt ├── run_tests.sh ├── setup.cfg ├── setup.py └── tests ├── README.md ├── cudaGSEA_subprocess_output.tsv ├── expression_data.tsv ├── gene_ontology_pathways.gmt ├── requirements.txt ├── sets_for_expression.gmt ├── test_expression_set.py ├── test_gene_sets.py ├── test_gsea.py ├── test_molecular_signatures_db.py └── test_msigdb ├── README.md ├── c2.cp.reactome.v7.0.symbols.gmt └── c2.cp.reactome.v7.1.symbols.gmt /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/krassowski/gsea-api/HEAD/.gitignore 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