├── .bumpversion.cfg ├── .github ├── dependabot.yml └── workflows │ ├── release.yml │ └── tests.yml ├── .gitignore ├── .pre-commit-config.yaml ├── .readthedocs.yml ├── LICENSE ├── README.md ├── demo ├── karate.edg ├── reproducibility.sh └── run_pecanpy ├── docs ├── Makefile ├── requirements.txt └── source │ ├── conf.py │ ├── index.rst │ └── pecanpy.rst ├── pyproject.toml ├── requirements.txt ├── setup.cfg ├── setup.py ├── src └── pecanpy │ ├── __init__.py │ ├── cli.py │ ├── experimental.py │ ├── graph.py │ ├── pecanpy.py │ ├── rw │ ├── __init__.py │ ├── dense_rw.py │ └── sparse_rw.py │ ├── typing.py │ └── wrappers.py ├── test ├── test_cli.py ├── test_graph.py ├── test_pecanpy.py └── test_walk.py └── tox.ini /.bumpversion.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/krishnanlab/PecanPy/HEAD/.bumpversion.cfg -------------------------------------------------------------------------------- /.github/dependabot.yml: 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