├── .gitignore ├── LICENSE ├── R ├── functions_analysis.R ├── functions_degs.R ├── functions_io.R ├── functions_plotting.R └── functions_util.R ├── README.md ├── R_style_guide.txt ├── css └── style.css ├── docs ├── installation.md ├── usage_preworkflow.md └── usage_workflow.md ├── scripts ├── apply_hto_for_cellranger_aggregate.R ├── run_scrnaseq.R └── run_scrnaseq_hto.R ├── scrnaseq.Rmd ├── scrnaseq.html ├── scrnaseq_hto.Rmd ├── scrnaseq_hto.html └── test_datasets ├── 10x_SmartSeq2_pbmc_GSE132044 └── download.R ├── 10x_pbmc_1k_healthyDonor_v3Chemistry └── download.R ├── 10x_pbmc_5k_protein └── download.R ├── 10x_pbmc_hto_GSE108313 └── download.R └── 10x_pbmc_small └── download.R /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ktrns/scrnaseq/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: 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