├── .gitignore ├── README.md ├── algorithms ├── __init__.py ├── contraction.py ├── mst.py └── scaffolder.py ├── architect.py ├── common ├── __init__.py ├── util.py └── visualize.py ├── examples ├── drosophila │ └── Makefile └── fragscaff │ └── run-experiments.sh ├── graph ├── __init__.py ├── graph.py ├── intervals.py ├── load.py ├── stats.py └── string_graph.py └── scripts ├── asqg2dot.pl ├── bam2containment.py ├── ground-truth ├── Makefile ├── bed2containment.py ├── bed2csv.py └── coords2bed.py ├── na50.py └── pe-connections.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kuleshov/architect/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kuleshov/architect/HEAD/README.md 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