├── .gitignore ├── PRROC.R ├── README.md ├── copyData.py ├── dataNormalizer.py ├── dataset.py ├── diConstants.py ├── evaluations.py ├── modelTemplates.py ├── models.py ├── prepData.py ├── runGMExperiments.py ├── scripts ├── averageSignalTrack.sh ├── convertBEDPEtoTagAlign.sh ├── convertBEDtoTagAlign.sh ├── convertWigToBigWig.sh ├── filterAndConvertBAMs.sh ├── filterAndConvertBAMs_SE.sh ├── findPeaks.sh ├── getSignalTrack.sh └── subsampleBEDPEs.sh └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kundajelab/coda/HEAD/.gitignore -------------------------------------------------------------------------------- /PRROC.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kundajelab/coda/HEAD/PRROC.R -------------------------------------------------------------------------------- /README.md: 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