├── .gitignore ├── .travis.yml ├── LICENSE ├── README.md ├── deeplift.egg-info ├── PKG-INFO ├── SOURCES.txt ├── dependency_links.txt ├── requires.txt └── top_level.txt ├── deeplift ├── __init__.py ├── conversion │ ├── __init__.py │ └── kerasapi_conversion.py ├── dinuc_shuffle.py ├── layers │ ├── __init__.py │ ├── activations.py │ ├── convolutional.py │ ├── core.py │ ├── helper_functions.py │ ├── normalization.py │ └── pooling.py ├── models.py ├── util.py └── visualization │ ├── __init__.py │ ├── matplotlib_helpers.py │ └── viz_sequence.py ├── examples ├── convert_models │ └── keras1.2to2 │ │ └── MNIST.ipynb ├── genomics │ ├── .gitignore │ ├── genomics_simulation.ipynb │ └── grab_model_and_data.sh └── mnist │ ├── MNIST_replicate_figures.ipynb │ └── grab_model.sh ├── setup.py └── tests ├── conversion ├── functional │ └── test_functional_concatenate_model.py └── sequential │ ├── test_conv1d_model_same_padding.py │ ├── test_conv1d_model_valid_padding.py │ ├── test_conv2d_model_channels_first.py │ ├── test_conv2d_model_same_padding.py │ ├── test_conv2d_model_valid_padding.py │ ├── test_load_batchnorm.py │ └── test_sigmoid_tanh_activations.py ├── layers ├── test_activation.py ├── test_concat.py ├── test_conv1d.py ├── test_conv2d.py ├── test_deeplift_genomics_default_mode.py ├── test_dense.py ├── test_pool1d.py └── test_pool2d.py └── shuffling └── test_dinuc_shuffle.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kundajelab/deeplift/HEAD/.gitignore -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kundajelab/deeplift/HEAD/.travis.yml -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 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