├── .gitignore ├── .travis.yml ├── CHANGES.txt ├── Dockerfile ├── LICENSE ├── MANIFEST.in ├── README.md ├── RuntimeType.png ├── docker ├── jupyter_config.py ├── keras.json └── theanorc ├── dragonn ├── __init__.py ├── calibration.py ├── callbacks.py ├── custom_losses.py ├── dragonn_predict_generator.py ├── generators.py ├── hyperparameter_search_tutorial.py ├── interpret │ ├── __init__.py │ ├── deeplift.py │ ├── input_grad.py │ └── ism.py ├── metrics.py ├── models.py ├── positional_prc.py ├── runtime_metrics.py ├── simulations.py ├── utils │ └── __init__.py └── vis │ ├── __init__.py │ ├── plot_kmers.py │ ├── plot_letters.py │ └── plot_model.py ├── examples ├── example_neg_sequences.fa ├── example_pos_sequences.fa └── simple_motif_detection.py ├── notes.txt ├── paper_supplement ├── README.md ├── hg19.chrom.sizes ├── primer_tutorial_images │ ├── CTCF_known1.png │ ├── SIX5_known1.png │ ├── TAL1_known4.png │ ├── ZNF143_known2.png │ ├── dragonn_and_pssm.jpg │ ├── dragonn_model_figure.jpg │ ├── homotypic_motif_density_localization.jpg │ ├── inspecting_code.png │ ├── one_hot_encoding.png │ ├── play_all_button.png │ ├── play_button.png │ ├── sequence_properties_1.jpg │ └── sequence_properties_2.jpg ├── primer_tutorial_models │ ├── multi_filter_dragonn.arch.json │ ├── multi_filter_dragonn.train_metrics.pkl │ ├── multi_filter_dragonn.valid_metrics.pkl │ ├── multi_filter_dragonn.weights.h5 │ ├── multi_layer_dragonn.arch.json │ ├── multi_layer_dragonn.train_metrics.pkl │ ├── multi_layer_dragonn.valid_metrics.pkl │ ├── multi_layer_dragonn.weights.h5 │ ├── one_filter_dragonn.arch.json │ ├── one_filter_dragonn.train_metrics.pkl │ ├── one_filter_dragonn.valid_metrics.pkl │ ├── one_filter_dragonn.weights.h5 │ ├── regularized_multi_layer_dragonn.arch.json │ ├── regularized_multi_layer_dragonn.train_metrics.pkl │ ├── regularized_multi_layer_dragonn.valid_metrics.pkl │ └── regularized_multi_layer_dragonn.weights.h5 ├── simulation_data │ ├── GC_fraction0.4center_size150max_motif_counts4min_motif_counts2motif_nameTAL1_known4num_neg10000num_pos10000seq_length1000.npz │ ├── GC_fraction0.4max_num_motifs3min_num_motifs0motif_names['CTCF_known1', 'ZNF143_known2', 'SIX5_known1']num_seqs20000seq_length500.npz │ ├── GC_fraction0.4max_spacing5min_spacing2motif1SPI1_known4motif2IRF_known20num_neg10000num_pos10000seq_length500.npz │ ├── GC_fraction0.4motif_nameTAL1_known4neg_counts(0, 2)num_neg10000num_pos10000pos_counts(3, 5)seq_length1000.npz │ └── GC_fraction0.4motif_nameTAL1_known4num_neg10000num_pos10000seq_length500.npz ├── simulation_models │ ├── in_vivo_ctcf_balanced_arch.arch.json │ ├── in_vivo_ctcf_balanced_model.weights.hd5 │ ├── in_vivo_six5_balanced_arch.arch.json │ ├── in_vivo_six5_balanced_model.weights.hd5 │ ├── in_vivo_znf143_balanced_arch.arch.json │ ├── in_vivo_znf143_balanced_model.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(10, 10, 10)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(10, 10, 10)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(10, 10, 10)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(1, 1, 1)pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(1, 1, 1)pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(1, 1, 1)pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(10, 10, 10)pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(10, 10, 10)pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(10, 10, 10)pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width15seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width15seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width15seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width25seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width25seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width25seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_1000.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_1000.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_1000.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_10000.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_10000.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_10000.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_11000.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_11000.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_11000.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_12000.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_12000.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_12000.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_2000.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_2000.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_2000.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_3000.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_3000.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_3000.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_4000.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_4000.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_4000.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_5000.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_5000.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_5000.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_6000.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_6000.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_6000.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_7000.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_7000.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_7000.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_8000.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_8000.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_8000.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_9000.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_9000.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_9000.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width45seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width45seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width45seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width55seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width55seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width55seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width5seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width5seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(15, 15, 15)pool_width5seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(20, 20, 20)pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(20, 20, 20)pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(20, 20, 20)pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(40, 40, 40)pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(40, 40, 40)pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(40, 40, 40)pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(5, 5, 5)pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(5, 5, 5)pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(15, 15, 15)dropout0.0num_filters(5, 5, 5)pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(20, 20, 20)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(20, 20, 20)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(20, 20, 20)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(3, 3, 3)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(3, 3, 3)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(3, 3, 3)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(30, 30, 30)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(30, 30, 30)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(30, 30, 30)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_heterodimer_grammar.L10conv_width(5, 5, 5)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_heterodimer_grammar.L10conv_width(5, 5, 5)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_heterodimer_grammar.L10conv_width(5, 5, 5)dropout0.0num_filters(15, 15, 15)pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(10,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_counting.L10conv_width(10,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_counting.L10conv_width(10,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(1,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(1,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(1,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width15seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width15seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width15seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width25seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width25seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width25seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_1000.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_1000.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_1000.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_10000.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_10000.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_10000.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_11000.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_11000.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_11000.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_12000.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_12000.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_12000.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_2000.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_2000.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_2000.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_3000.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_3000.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_3000.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_4000.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_4000.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_4000.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_5000.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_5000.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_5000.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_6000.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_6000.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_6000.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_7000.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_7000.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_7000.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_8000.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_8000.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_8000.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_9000.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_9000.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_9000.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width45seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width45seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width45seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width55seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width55seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width55seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width5seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width5seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width5seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(20,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(20,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(20,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(40,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(40,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(40,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(5,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(5,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_counting.L10conv_width(15,)dropout0.0num_filters(5,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(20,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_counting.L10conv_width(20,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_counting.L10conv_width(20,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(3,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_counting.L10conv_width(3,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_counting.L10conv_width(3,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(30,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_counting.L10conv_width(30,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_counting.L10conv_width(30,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_counting.L10conv_width(5,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_counting.L10conv_width(5,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_counting.L10conv_width(5,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(10,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_density_localization.L10conv_width(10,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(10,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(1,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(1,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(1,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width15seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width15seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width15seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width25seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width25seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width25seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_1000.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_1000.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_1000.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_10000.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_10000.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_10000.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_11000.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_11000.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_11000.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_12000.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_12000.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_12000.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_2000.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_2000.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_2000.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_3000.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_3000.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_3000.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_4000.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_4000.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_4000.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_5000.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_5000.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_5000.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_6000.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_6000.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_6000.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_7000.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_7000.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_7000.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_8000.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_8000.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_8000.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_9000.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_9000.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.train_set_size_9000.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width45seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width45seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width45seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width55seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width55seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width55seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width5seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width5seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width5seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(20,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(20,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(20,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(40,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(40,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(40,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(5,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(5,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(15,)dropout0.0num_filters(5,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(20,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_density_localization.L10conv_width(20,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(20,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(3,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_density_localization.L10conv_width(3,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(3,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(30,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_density_localization.L10conv_width(30,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(30,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_motif_density_localization.L10conv_width(5,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.arch.json │ ├── simulate_motif_density_localization.L10conv_width(5,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_motif_density_localization.L10conv_width(5,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length1000use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(10,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(10,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(10,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(1,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(1,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(1,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width15seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width15seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width15seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width25seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width25seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width25seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_1000.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_1000.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_1000.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_10000.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_10000.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_10000.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_11000.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_11000.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_11000.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_12000.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_12000.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_12000.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_2000.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_2000.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_2000.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_3000.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_3000.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_3000.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_4000.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_4000.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_4000.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_5000.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_5000.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_5000.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_6000.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_6000.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_6000.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_7000.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_7000.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_7000.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_8000.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_8000.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_8000.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_9000.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_9000.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_9000.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width45seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width45seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width45seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width55seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width55seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width55seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width5seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width5seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks3pool_width5seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(20,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(20,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(20,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(40,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(40,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(40,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(5,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(5,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(15,)dropout0.0num_filters(5,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(20,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(20,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(20,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(3,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(3,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(3,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(30,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(30,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(30,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_multi_motif_embedding.L10conv_width(5,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_multi_motif_embedding.L10conv_width(5,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_multi_motif_embedding.L10conv_width(5,)dropout0.0num_filters(10,)num_tasks3pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_single_motif_detection.L10conv_width(10,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_single_motif_detection.L10conv_width(10,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_single_motif_detection.L10conv_width(10,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(1,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(1,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(1,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width15seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width15seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width15seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width25seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width25seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width25seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_1000.arch.json │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_1000.weights.h5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_1000.weights.hd5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_10000.arch.json │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_10000.weights.h5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_10000.weights.hd5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_11000.arch.json │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_11000.weights.h5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_11000.weights.hd5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_12000.arch.json │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.train_set_size_12000.weights.h5 │ ├── 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simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width45seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width45seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width45seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(10,)num_tasks1pool_width55seq_length500use_RNNFalseverboseFalse.arch.json │ ├── 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simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(20,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(20,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(40,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(40,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(40,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 │ ├── simulate_single_motif_detection.L10conv_width(15,)dropout0.0num_filters(5,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.arch.json │ ├── 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simulate_single_motif_detection.L10conv_width(5,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.weights.h5 │ └── simulate_single_motif_detection.L10conv_width(5,)dropout0.0num_filters(10,)num_tasks1pool_width35seq_length500use_RNNFalseverboseFalse.weights.hd5 ├── simulation_performance_results.py └── tasks.tsv ├── pytest.ini ├── scripts ├── download_model_binary.py ├── download_model_from_gist.sh └── upload_model_to_gist.sh ├── setup.py ├── tests └── test_architectures.py └── tutorials ├── ENCODE_Jamboree_July2019_DragonnTutorial.ipynb ├── ISM.ipynb ├── LowMemQC.ipynb ├── Positional PRC.ipynb ├── README.md ├── SPI1 Genomewide regression Born Again Training .ipynb ├── Supplementary Primer Tutorial 1 - Effects of Suboptimal Architecture on Functional variant characterization for non-coding SNPs within the SPI1 motif.ipynb ├── Supplementary Primer Tutorial 2 - Effects of suboptimal architecture on Interpreting predictive sequence features in TF binding events within the GM12878 cell line.ipynb ├── Tutorial 1 - Exploring model architectures for a homotypic motif density simulation.ipynb ├── Tutorial 2 - Hyperparameter Tuning via Grid Search.ipynb ├── Tutorial 3 - Interpreting features induced by DNN's across multiple types of motif grammars.ipynb ├── Tutorial 4 - Interpreting predictive sequence features in TF binding events within the GM12878 cell line.ipynb ├── Tutorial 5 - Functional variant characterization for non-coding SNPs within the SPI1 motif.ipynb ├── hg19.chrom.sizes ├── test_deeplift.py ├── test_shuffle.py └── tutorial_images ├── CTCF.Tut4.png ├── CTCF_known1.png ├── ChangeRuntime.png ├── GenomeWideModel.png ├── MultiLayerTraining.png ├── RunAllCollab.png ├── RunCellArrow.png ├── RuntimeType.png ├── SIX5_known1.png ├── SPI1.Tut4.png ├── SPIB.Kat.png ├── SimArch1Layer.png ├── TAL1_known4.png ├── ZNF143_known2.png ├── classification_task.jpg ├── dnn_figure.png ├── dragonn_and_pssm.jpg ├── dragonn_model_figure.jpg 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