├── .circleci └── config.yml ├── LICENSE ├── MANIFEST.in ├── README.md ├── examples └── JUND.HepG2.chr22.101bp_intervals.tsv.gz ├── genomelake ├── __init__.py ├── backend.py ├── extractors.py ├── tiledb_array.py └── util.pyx ├── setup.cfg ├── setup.py └── tests ├── data ├── fasta_test.fa └── test_bigwig.bw └── test_extractors.py /.circleci/config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kundajelab/genomelake/HEAD/.circleci/config.yml -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kundajelab/genomelake/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kundajelab/genomelake/HEAD/MANIFEST.in -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kundajelab/genomelake/HEAD/README.md -------------------------------------------------------------------------------- /examples/JUND.HepG2.chr22.101bp_intervals.tsv.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kundajelab/genomelake/HEAD/examples/JUND.HepG2.chr22.101bp_intervals.tsv.gz -------------------------------------------------------------------------------- /genomelake/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kundajelab/genomelake/HEAD/genomelake/__init__.py -------------------------------------------------------------------------------- /genomelake/backend.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kundajelab/genomelake/HEAD/genomelake/backend.py -------------------------------------------------------------------------------- /genomelake/extractors.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kundajelab/genomelake/HEAD/genomelake/extractors.py -------------------------------------------------------------------------------- /genomelake/tiledb_array.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kundajelab/genomelake/HEAD/genomelake/tiledb_array.py -------------------------------------------------------------------------------- /genomelake/util.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kundajelab/genomelake/HEAD/genomelake/util.pyx -------------------------------------------------------------------------------- /setup.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kundajelab/genomelake/HEAD/setup.cfg -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kundajelab/genomelake/HEAD/setup.py -------------------------------------------------------------------------------- /tests/data/fasta_test.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kundajelab/genomelake/HEAD/tests/data/fasta_test.fa -------------------------------------------------------------------------------- /tests/data/test_bigwig.bw: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kundajelab/genomelake/HEAD/tests/data/test_bigwig.bw -------------------------------------------------------------------------------- /tests/test_extractors.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kundajelab/genomelake/HEAD/tests/test_extractors.py --------------------------------------------------------------------------------