├── .DS_Store ├── LICENSE ├── README.md ├── colores_fit.sh ├── colores_fit_all.sh ├── colores_fit_dev.sh ├── dev └── relion.movie_add_ctf.sh ├── epu.timestamp_plot.sh ├── macOS.gitignore ├── not_maintained ├── .DS_Store ├── relion.star_info_old_060821.sh └── relion.star_info_rln_v2.sh ├── relion.backup_SGD_final_files.sh ├── relion.backup_directory.sh ├── relion.backup_directory_server.sh ├── relion.backup_last_iteration.sh ├── relion.backup_last_iteration_server.sh ├── relion.backup_pipeline.sh ├── relion.backup_refine_final_files.sh ├── relion.backup_refine_final_files_server.sh ├── relion.job_monitor.sh ├── relion.job_time.sh ├── relion.map_bfactor.sh ├── relion.map_lowpass.sh ├── relion.map_zflip.sh ├── relion.plot_class_distribution.sh ├── relion.plot_class_occupancy.sh ├── relion.plot_coords.sh ├── relion.plot_run.sh ├── relion.postprocess_make_vol_series.sh ├── relion.star_data_extract.sh ├── relion.star_data_handler.sh ├── relion.star_data_plot.sh ├── relion.star_info.sh ├── relion.star_split_header_and_data.sh ├── relion.star_to_coords.sh ├── replace_in_filename.sh ├── review ├── compress_frames.sh ├── ctffind_plot_results_batch.sh ├── ctftilt3_mp_script.sh ├── e2.alignmovies.sh ├── e2.make_shell.sh ├── e2.make_sphere_mask.sh ├── e2.map_to_projections.sh ├── e2.proc2d_batch.sh ├── e2.proc2d_convert_to_float.sh ├── e2.proc2d_tvips_to_png.sh ├── e2.proc3d_filt.sh ├── e2.proc3d_remove_negative_density.sh ├── e2.projection_match_model.sh ├── finddqe.sh ├── gautomatch_run.sh ├── gctf_plot.sh ├── gctf_run_local.sh ├── lmbgctf_check_box_by_ctf.sh ├── lmbgctf_plot_EPA.sh ├── lmbgctf_plot_EPA_all.sh ├── local_defocus_plot.py ├── motioncor2_run.sh ├── phenix.map_model_fsc.sh ├── polishEM_run.sh ├── relion.mask_apply.sh ├── relion.plot_localres.sh ├── relion.postprocess_manual.sh ├── relion.postprocess_optimise.sh ├── relion.reconstruct_halfmaps.sh ├── relion.resmap_plot.sh ├── relion.star_2_to_1.4.py ├── resample_batch.sh └── sips_batch.sh └── rln2 ├── relion.ctf_remove_bad.sh ├── relion.display_ctf.sh ├── relion.focused_extraction_from_ptcls.sh ├── relion.import_gautomatch.sh ├── relion.make_grouped_star.sh ├── relion.make_micrograph_star.sh ├── relion.make_movie_subset.sh ├── relion.make_split_mic.sh ├── relion.plot_fsc.sh ├── relion.plot_star_angles.py ├── relion.plot_star_data.sh ├── relion.plot_star_metrics.py ├── relion.plot_star_metrics.sh ├── relion.select_classes.sh ├── relion.star_add_mic_data_to_ptcl_star.sh ├── relion.star_bin_rescale.sh ├── relion.star_filter_by_list.sh ├── relion.star_filter_by_png_directory.sh ├── relion.star_filter_by_star.sh ├── relion.star_filter_defocus.sh ├── relion.star_flipZ.sh ├── relion.star_join.sh ├── relion.star_join_batch.sh ├── relion.star_print_header.sh ├── relion.star_replace_UVA_ptcl_from_mics_star.sh ├── relion.star_replace_UVA_ptcl_from_ptcl_local_star.sh ├── relion.star_replace_UVA_ptcl_from_ptcl_star.sh ├── relion.star_replace_XYang_ptcl_from_ptcl_star.sh ├── relion.star_replace_ang.sh ├── relion.star_replace_ctf.sh ├── relion.star_replace_mag.sh ├── relion.star_shift_particles.sh ├── relion.star_shift_particles_helical.sh ├── relion.star_swap_column.sh ├── relion.star_to_frealign.sh └── relion.star_to_simple_ctf.sh /.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kylelmorris/bashEM/HEAD/.DS_Store -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kylelmorris/bashEM/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kylelmorris/bashEM/HEAD/README.md -------------------------------------------------------------------------------- /colores_fit.sh: 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