├── .gitignore ├── MANIFEST.in ├── README.md ├── biovec ├── __init__.py ├── models │ ├── __init__.py │ └── prot_vec.py └── utils.py ├── docs └── protvec.md ├── sample_aa_file.fasta ├── setup.py ├── tests └── test_models │ └── test_prot_vec.py └── trained_models └── swissprot-reviewed-protvec.model /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kyu999/biovec/HEAD/.gitignore -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- 1 | include trained_model/* -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kyu999/biovec/HEAD/README.md -------------------------------------------------------------------------------- /biovec/__init__.py: -------------------------------------------------------------------------------- 1 | from biovec import models -------------------------------------------------------------------------------- /biovec/models/__init__.py: -------------------------------------------------------------------------------- 1 | from biovec.models.prot_vec import * -------------------------------------------------------------------------------- /biovec/models/prot_vec.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kyu999/biovec/HEAD/biovec/models/prot_vec.py -------------------------------------------------------------------------------- /biovec/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kyu999/biovec/HEAD/biovec/utils.py -------------------------------------------------------------------------------- /docs/protvec.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kyu999/biovec/HEAD/docs/protvec.md -------------------------------------------------------------------------------- /sample_aa_file.fasta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kyu999/biovec/HEAD/sample_aa_file.fasta -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kyu999/biovec/HEAD/setup.py -------------------------------------------------------------------------------- /tests/test_models/test_prot_vec.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kyu999/biovec/HEAD/tests/test_models/test_prot_vec.py -------------------------------------------------------------------------------- /trained_models/swissprot-reviewed-protvec.model: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kyu999/biovec/HEAD/trained_models/swissprot-reviewed-protvec.model --------------------------------------------------------------------------------