├── .gitattributes ├── .gitignore ├── LICENSE ├── README.md ├── data_conversion ├── mha2nii.py ├── nii2mha.py ├── tcia2hdf5.py └── tcia2nifti.py ├── nnUNet_baseline ├── .gitattributes ├── .github │ └── workflows │ │ └── ci.yml ├── .gitignore ├── Dockerfile ├── Dockerfile.eval ├── README.md ├── build.sh ├── export.sh ├── predict.py ├── process.py ├── requirements.txt ├── test.sh └── weights.zip ├── test ├── expected_output_nnUNet │ └── images │ │ └── TCIA_001.nii.gz ├── expected_output_uNet │ └── PRED.nii.gz └── input │ └── images │ ├── ct │ └── af3b6605-c2b9-4067-8af5-8b85aafb2ae3.mha │ └── pet │ └── e260efef-0a29-4c68-972e-9e573c740de5.mha ├── uNet_baseline ├── .gitattributes ├── .github │ └── workflows │ │ └── ci.yml ├── .gitignore ├── Dockerfile ├── Dockerfile.eval ├── README.md ├── build.sh ├── epoch=777-step=64573.ckpt ├── export.sh ├── monai_unet.py ├── process.py ├── requirements.txt └── test.sh └── val_script.py /.gitattributes: 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