├── .coveragerc ├── LICENSE ├── README.md ├── codecov.yml ├── docs ├── .icons │ └── logo.svg ├── api.md ├── deepcoil_dataset.ipynb ├── hiv_protease.ipynb ├── img │ ├── example1.png │ ├── example2.png │ ├── example3.png │ ├── favicon.ico │ ├── logo.svg │ └── overview.png ├── index.md ├── lpdb.md ├── lpdb_chains.md ├── lpdb_entries.md ├── lpdb_search.md ├── overview.md ├── plugin_guide.md ├── plugins.md ├── setup.md ├── stylesheets │ └── extra.css └── viral_ccs.ipynb ├── localpdb ├── PDB.py ├── PDBDownloader.py ├── PDBVersioneer.py ├── __init__.py ├── localpdb_setup.py ├── plugins │ ├── Biounit.py │ ├── DSSP.py │ ├── ECOD.py │ ├── MasterChain.py │ ├── PDBChain.py │ ├── PDBClustering.py │ ├── PDBSeqresMapper.py │ ├── Plugin.py │ ├── PluginVersioneer.py │ ├── PrepPDBSeqresMapper.py │ ├── SIFTS.py │ ├── Socket.py │ ├── __init__.py │ ├── config │ │ ├── Biounit.yml │ │ ├── DSSP.yml │ │ ├── ECOD.yml │ │ ├── MasterChain.yml │ │ ├── PDBChain.yml │ │ ├── PDBClustering.yml │ │ ├── PDBSeqresMapper.yml │ │ ├── SIFTS.yml │ │ ├── Socket.yml │ │ └── __init__.py │ └── utils │ │ ├── MakeMultimer.py │ │ └── __init__.py └── utils │ ├── __init__.py │ ├── config.py │ ├── errors.py │ ├── network.py │ ├── os.py │ ├── prot.py │ ├── remote_sources.yml │ ├── rest_api.py │ └── search_api │ ├── __init__.py │ ├── commands.py │ ├── parsers.py │ ├── queries.py │ ├── search.py │ ├── services.py │ └── tools │ ├── __init__.py │ └── text_api_input_fetcher.py ├── mkdocs.yml ├── poetry.lock ├── pyproject.toml └── tests ├── test_config.yml ├── test_localpdb_setup.py ├── test_localpdb_update.py └── test_search_api.py /.coveragerc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/labstructbioinf/localpdb/HEAD/.coveragerc -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 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