├── .gitignore ├── CITATION.cff ├── LICENSE ├── README.md ├── assets ├── coarse-af-he-match.jpg ├── coarse-af-he.jpg ├── coarse-dna-he-match.jpg └── coarse-dna-he.jpg ├── conda-env └── env-win-64.lock ├── palom-logo.svg ├── palom ├── __init__.py ├── align.py ├── align_multi_obj.py ├── align_multi_res.py ├── block_affine.py ├── cli │ ├── __init__.py │ ├── align_he.py │ ├── compress_rgb_jpeg.py │ ├── doc │ │ └── align_he.md │ ├── flow.py │ ├── helper.py │ ├── pyramid_tools.py │ ├── schema │ │ ├── __init__.py │ │ ├── svs-config-example.yml │ │ └── svs-config-schema.yml │ └── svs.py ├── color.py ├── extract.py ├── img_util.py ├── openslide_store.py ├── pyramid.py ├── reader.py ├── register.py ├── register_dev.py ├── register_util.py └── slideio_store.py └── pyproject.toml /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/labsyspharm/palom/HEAD/.gitignore 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