├── .github └── workflows │ ├── build_and_release.yml │ └── merge.yml ├── .gitignore ├── LICENSE ├── README.md ├── Timing.ipynb ├── graph_data ├── times_dict_perm_0.pk ├── times_dict_perm_1.pk ├── times_dict_perm_2.pk ├── times_dict_perm_3.pk └── times_dict_perm_4.pk ├── icon.ico ├── minerva_analysis ├── __init__.py ├── client │ ├── .gitignore │ ├── dist │ │ ├── 693b935cb1f907814be9c6199a68c217.svg │ │ ├── 713c134ff47cd328a5b711526f151082.svg │ │ ├── ff743f408972e0e96ca9153ed5ae4c83.svg │ │ └── vendor_bundle.js │ ├── external │ │ └── openseadragon-bin-2.4.0 │ │ │ ├── LICENSE.txt │ │ │ ├── canvas-overlay-hd.js │ │ │ ├── changelog.txt │ │ │ ├── images │ │ │ ├── button_grouphover.png │ │ │ ├── button_hover.png │ │ │ ├── button_pressed.png │ │ │ ├── button_rest.png │ │ │ ├── flip_grouphover.png │ │ │ ├── flip_hover.png │ │ │ ├── flip_pressed.png │ │ │ ├── flip_rest.png │ │ │ ├── fullpage_grouphover.png │ │ │ ├── fullpage_hover.png │ │ │ ├── fullpage_pressed.png │ │ │ ├── fullpage_rest.png │ │ │ ├── home_grouphover.png │ │ │ ├── home_hover.png │ │ │ ├── home_pressed.png │ │ │ ├── home_rest.png │ │ │ ├── next_grouphover.png │ │ │ ├── next_hover.png │ │ │ ├── next_pressed.png │ │ │ ├── next_rest.png │ │ │ ├── previous_grouphover.png │ │ │ ├── previous_hover.png │ │ │ ├── previous_pressed.png │ │ │ ├── previous_rest.png │ │ │ ├── rotateleft_grouphover.png │ │ │ ├── rotateleft_hover.png │ │ │ ├── rotateleft_pressed.png │ │ │ ├── rotateleft_rest.png │ │ │ ├── rotateright_grouphover.png │ │ │ ├── rotateright_hover.png │ │ │ ├── rotateright_pressed.png │ │ │ ├── rotateright_rest.png │ │ │ ├── zoomin_grouphover.png │ │ │ ├── zoomin_hover.png │ │ │ ├── zoomin_pressed.png │ │ │ ├── zoomin_rest.png │ │ │ ├── zoomout_grouphover.png │ │ │ ├── zoomout_hover.png │ │ │ ├── zoomout_pressed.png │ │ │ └── zoomout_rest.png │ │ │ ├── openSeadragonGL.js │ │ │ ├── openseadragon-filtering.js │ │ │ ├── openseadragon-flat-toolbar-icons-master │ │ │ ├── .gitattributes │ │ │ ├── LICENSE.txt │ │ │ ├── README.md │ │ │ ├── images │ │ │ │ ├── fullpage_grouphover.png │ │ │ │ ├── fullpage_hover.png │ │ │ │ ├── fullpage_pressed.png │ │ │ │ ├── fullpage_rest.png │ │ │ │ ├── home_grouphover.png │ │ │ │ ├── home_hover.png │ │ │ │ ├── home_pressed.png │ │ │ │ ├── home_rest.png │ │ │ │ ├── next_grouphover.png │ │ │ │ ├── next_hover.png │ │ │ │ ├── next_pressed.png │ │ │ │ ├── next_rest.png │ │ │ │ ├── previous_grouphover.png │ │ │ │ ├── previous_hover.png │ │ │ │ ├── previous_pressed.png │ │ │ │ ├── previous_rest.png │ │ │ │ ├── rotateleft_grouphover.png │ │ │ │ ├── rotateleft_hover.png │ │ │ │ ├── rotateleft_pressed.png │ │ │ │ ├── rotateleft_rest.png │ │ │ │ ├── rotateright_grouphover.png │ │ │ │ ├── rotateright_hover.png │ │ │ │ ├── rotateright_pressed.png │ │ │ │ ├── rotateright_rest.png │ │ │ │ ├── zoomin_grouphover.png │ │ │ │ ├── zoomin_hover.png │ │ │ │ ├── zoomin_pressed.png │ │ │ │ ├── zoomin_rest.png │ │ │ │ ├── zoomout_grouphover.png │ │ │ │ ├── zoomout_hover.png │ │ │ │ ├── zoomout_pressed.png │ │ │ │ └── zoomout_rest.png │ │ │ └── material │ │ │ │ ├── home_grouphover.png │ │ │ │ ├── home_hover.png │ │ │ │ ├── home_pressed.png │ │ │ │ ├── home_rest.png │ │ │ │ ├── zoomin_grouphover.png │ │ │ │ ├── zoomin_hover.png │ │ │ │ ├── zoomin_pressed.png │ │ │ │ ├── zoomin_rest.png │ │ │ │ ├── zoomout_grouphover.png │ │ │ │ ├── zoomout_hover.png │ │ │ │ ├── zoomout_pressed.png │ │ │ │ └── zoomout_rest.png │ │ │ ├── openseadragon-svg-overlay.js │ │ │ ├── openseadragon.js │ │ │ ├── openseadragon.js.map │ │ │ ├── openseadragon.min.js │ │ │ ├── openseadragon.min.js.map │ │ │ ├── openseadragonrgb.js │ │ │ └── viaWebGL.js │ ├── package-lock.json │ ├── package.json │ ├── src │ │ ├── css │ │ │ ├── main.css │ │ │ ├── neighborhood.css │ │ │ └── viewer.css │ │ ├── img │ │ │ ├── android-chrome-192x192.png │ │ │ ├── android-chrome-512x512.png │ │ │ ├── apple-touch-icon.png │ │ │ ├── browserconfig.xml │ │ │ ├── favicon-16x16.png │ │ │ ├── favicon-32x32.png │ │ │ ├── favicon.ico │ │ │ ├── gesture-24px.svg │ │ │ ├── mstile-144x144.png │ │ │ ├── mstile-150x150.png │ │ │ ├── mstile-310x150.png │ │ │ ├── mstile-310x310.png │ │ │ ├── mstile-70x70.png │ │ │ ├── near_me-24px.svg │ │ │ ├── safari-pinned-tab.svg │ │ │ └── site.webmanifest │ │ ├── js │ │ │ ├── main.js │ │ │ ├── services │ │ │ │ ├── colorScheme.js │ │ │ │ ├── dataLayer.js │ │ │ │ ├── passVariablesToFrontend.js │ │ │ │ └── simpleEventHandler.js │ │ │ ├── vendor.js │ │ │ └── views │ │ │ │ ├── barchart.js │ │ │ │ ├── cellInformation.js │ │ │ │ ├── channelList.js │ │ │ │ ├── channelMatch.js │ │ │ │ ├── colorToggle.js │ │ │ │ ├── comparison.js │ │ │ │ ├── heatmap.js │ │ │ │ ├── imageViewer.js │ │ │ │ ├── infoVis.js │ │ │ │ ├── legend.js │ │ │ │ ├── lensingFilters │ │ │ │ ├── lfChannelRelationships.js │ │ │ │ ├── lfChannelView.js │ │ │ │ ├── lfDataColors.js │ │ │ │ ├── lfNearestCell.js │ │ │ │ ├── lfNearestCells.js │ │ │ │ └── lfSegmentationOutlines.js │ │ │ │ ├── lensingFiltersExt.js │ │ │ │ ├── multiImageView.js │ │ │ │ ├── neighborhoodComparison.js │ │ │ │ ├── neighborhoodTable.js │ │ │ │ ├── parallel_coordinates.js │ │ │ │ ├── progressBar.js │ │ │ │ ├── rainbow.js │ │ │ │ ├── scatter.js │ │ │ │ ├── stackedBarchart.js │ │ │ │ ├── starplot.js │ │ │ │ ├── starplot_area.js │ │ │ │ ├── starplot_regl.js │ │ │ │ ├── uploadForm.js │ │ │ │ └── viewerManager.js │ │ └── shaders │ │ │ ├── frag.glsl │ │ │ └── vert.glsl │ ├── templates │ │ ├── base.html │ │ ├── cell_icon.html │ │ ├── channel_match.html │ │ ├── compare_neighborhoods.html │ │ ├── contour_icon.html │ │ ├── index.html │ │ └── upload.html │ └── webpack.config.js └── server │ ├── models │ ├── data_model.py │ ├── database_model.py │ └── test.ipynb │ ├── routes │ ├── data_routes.py │ ├── import_routes.py │ └── page_routes.py │ └── utils │ ├── addHEColumns.py │ ├── cluster_dict_perm_0.pk │ ├── cluster_params.py │ ├── cluster_timing.py │ ├── compare.pk │ ├── fullConversion.py │ ├── jaxGMM.py │ ├── lnr.py │ ├── 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