├── LigandMPNN_Rosetta_dockerfile ├── README.md ├── RFdiffusion_dockerfile ├── config.py ├── config_all_atom.yml ├── create_configs.py ├── diffuse.py ├── fold.py ├── run_cluster.py ├── seqdesign.py └── utils.py /LigandMPNN_Rosetta_dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lauramarie99/ProtDesign2/HEAD/LigandMPNN_Rosetta_dockerfile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lauramarie99/ProtDesign2/HEAD/README.md -------------------------------------------------------------------------------- /RFdiffusion_dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lauramarie99/ProtDesign2/HEAD/RFdiffusion_dockerfile -------------------------------------------------------------------------------- /config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lauramarie99/ProtDesign2/HEAD/config.py -------------------------------------------------------------------------------- /config_all_atom.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lauramarie99/ProtDesign2/HEAD/config_all_atom.yml -------------------------------------------------------------------------------- /create_configs.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lauramarie99/ProtDesign2/HEAD/create_configs.py -------------------------------------------------------------------------------- /diffuse.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lauramarie99/ProtDesign2/HEAD/diffuse.py -------------------------------------------------------------------------------- /fold.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lauramarie99/ProtDesign2/HEAD/fold.py -------------------------------------------------------------------------------- /run_cluster.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lauramarie99/ProtDesign2/HEAD/run_cluster.py -------------------------------------------------------------------------------- /seqdesign.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lauramarie99/ProtDesign2/HEAD/seqdesign.py -------------------------------------------------------------------------------- /utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lauramarie99/ProtDesign2/HEAD/utils.py --------------------------------------------------------------------------------