├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── R ├── SRS014459_Stool_profile.R ├── parser.R ├── utils.R └── visualizer.R ├── README.md ├── data └── SRS014459_Stool_profile.rda ├── man ├── SRS014459_Stool_profile.Rd ├── clade.anno.Rd ├── fix_duplicate_tax.Rd ├── formatPhrase.Rd ├── lefse.lda.plot.Rd ├── parseMetaphlanTSV.Rd ├── parsePhyloseq.Rd ├── summarize_taxa.Rd └── tree.backbone.Rd ├── microbiomeViz.Rproj └── vignettes └── BasicUsage.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lch14forever/microbiomeViz/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lch14forever/microbiomeViz/HEAD/.gitignore -------------------------------------------------------------------------------- /DESCRIPTION: 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