├── .Rbuildignore ├── .gitignore ├── .travis.yml ├── DESCRIPTION ├── NAMESPACE ├── R ├── aaa_utils.R ├── build_predictor.R ├── data.R ├── extract_data.R ├── filter_regions.R ├── merge_input.R ├── optimize_numRegions.R ├── predict_pheno.R └── test_predictor.R ├── README.Rmd ├── README.md ├── appveyor.yml ├── codecov.yml ├── data ├── inputdata.rda ├── prebuilt_predictors.rda ├── predictor.rda ├── regiondata.rda └── sysdata.rda ├── man ├── build_predictor.Rd ├── cm.Rd ├── cm_new.Rd ├── extract_data.Rd ├── filter_regions.Rd ├── inputdata.Rd ├── merge_input.Rd ├── optimize_numRegions.Rd ├── pheno.Rd ├── predict_pheno.Rd ├── predictor.Rd ├── predictor_samplesource.Rd ├── predictor_sequencingstrategy.Rd ├── predictor_sex.Rd ├── predictor_tissue.Rd ├── regiondata.Rd └── test_predictor.Rd ├── phenopredict.Rproj ├── tests ├── testthat.R └── testthat │ ├── test-build_predictor.R │ ├── test-data.R │ ├── test-extract_data.R │ ├── test-filter_regions.R │ ├── test-merge_input.R │ ├── test-predict_pheno.R │ └── test-test_predictor.R └── vignettes ├── .Rapp.history ├── phenopredict-quickstart.R ├── phenopredict-quickstart.Rmd └── phenopredict-quickstart.html /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/leekgroup/phenopredict/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/leekgroup/phenopredict/HEAD/.gitignore -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/leekgroup/phenopredict/HEAD/.travis.yml -------------------------------------------------------------------------------- /DESCRIPTION: 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