├── CHANGES.md ├── LICENSE.txt ├── README.md ├── generateannotations.pl ├── reorderheader.pl ├── split.pl ├── svscore.pl └── tests ├── NA12878.sv.svscore.vcf ├── NA12878.sv.vcf ├── dummyCADD.tsv.gz ├── dummyCADD.tsv.gz.tbi ├── dummyannotations.bed ├── scorecomparison.pl ├── stresstest.svscore.vcf ├── stresstest.vcf └── test.sh /CHANGES.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lganel/SVScore/HEAD/CHANGES.md -------------------------------------------------------------------------------- /LICENSE.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lganel/SVScore/HEAD/LICENSE.txt -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lganel/SVScore/HEAD/README.md -------------------------------------------------------------------------------- /generateannotations.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lganel/SVScore/HEAD/generateannotations.pl -------------------------------------------------------------------------------- /reorderheader.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lganel/SVScore/HEAD/reorderheader.pl -------------------------------------------------------------------------------- /split.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lganel/SVScore/HEAD/split.pl -------------------------------------------------------------------------------- /svscore.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lganel/SVScore/HEAD/svscore.pl -------------------------------------------------------------------------------- /tests/NA12878.sv.svscore.vcf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lganel/SVScore/HEAD/tests/NA12878.sv.svscore.vcf -------------------------------------------------------------------------------- /tests/NA12878.sv.vcf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lganel/SVScore/HEAD/tests/NA12878.sv.vcf -------------------------------------------------------------------------------- /tests/dummyCADD.tsv.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lganel/SVScore/HEAD/tests/dummyCADD.tsv.gz -------------------------------------------------------------------------------- /tests/dummyCADD.tsv.gz.tbi: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lganel/SVScore/HEAD/tests/dummyCADD.tsv.gz.tbi -------------------------------------------------------------------------------- /tests/dummyannotations.bed: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lganel/SVScore/HEAD/tests/dummyannotations.bed -------------------------------------------------------------------------------- /tests/scorecomparison.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lganel/SVScore/HEAD/tests/scorecomparison.pl -------------------------------------------------------------------------------- /tests/stresstest.svscore.vcf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lganel/SVScore/HEAD/tests/stresstest.svscore.vcf -------------------------------------------------------------------------------- /tests/stresstest.vcf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lganel/SVScore/HEAD/tests/stresstest.vcf -------------------------------------------------------------------------------- /tests/test.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lganel/SVScore/HEAD/tests/test.sh --------------------------------------------------------------------------------