├── .github └── workflows │ ├── pythonpackage.yml │ ├── pythonpublish.yml │ └── webpages.yml ├── .travis.yml ├── LICENSE ├── MANIFEST.in ├── README.md ├── data ├── test.fq ├── test_longqualityheader.fq └── test_multiline.fq ├── doc ├── Makefile ├── _static │ └── my-styles.css ├── _templates │ └── layout.html ├── conf.py ├── index.rst ├── installation.rst ├── make.bat ├── performance.rst ├── requirements.txt └── user-guide.rst ├── docs ├── base.css └── index.html ├── pyproject.toml ├── setup.py ├── src ├── _fastqandfurious.c ├── demo │ └── benchmark.py └── fastqandfurious.py ├── tests.py └── throughput.svg /.github/workflows/pythonpackage.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/.github/workflows/pythonpackage.yml -------------------------------------------------------------------------------- /.github/workflows/pythonpublish.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/.github/workflows/pythonpublish.yml -------------------------------------------------------------------------------- /.github/workflows/webpages.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/.github/workflows/webpages.yml -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/.travis.yml -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- 1 | include README.md LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/README.md -------------------------------------------------------------------------------- /data/test.fq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/data/test.fq -------------------------------------------------------------------------------- /data/test_longqualityheader.fq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/data/test_longqualityheader.fq -------------------------------------------------------------------------------- /data/test_multiline.fq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/data/test_multiline.fq -------------------------------------------------------------------------------- /doc/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/doc/Makefile -------------------------------------------------------------------------------- /doc/_static/my-styles.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/doc/_static/my-styles.css -------------------------------------------------------------------------------- /doc/_templates/layout.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/doc/_templates/layout.html -------------------------------------------------------------------------------- /doc/conf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/doc/conf.py -------------------------------------------------------------------------------- /doc/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/doc/index.rst -------------------------------------------------------------------------------- /doc/installation.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/doc/installation.rst -------------------------------------------------------------------------------- /doc/make.bat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/doc/make.bat -------------------------------------------------------------------------------- /doc/performance.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/doc/performance.rst -------------------------------------------------------------------------------- /doc/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/doc/requirements.txt -------------------------------------------------------------------------------- /doc/user-guide.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/doc/user-guide.rst -------------------------------------------------------------------------------- /docs/base.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/docs/base.css -------------------------------------------------------------------------------- /docs/index.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/docs/index.html -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/pyproject.toml -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/setup.py -------------------------------------------------------------------------------- /src/_fastqandfurious.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/src/_fastqandfurious.c -------------------------------------------------------------------------------- /src/demo/benchmark.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/src/demo/benchmark.py -------------------------------------------------------------------------------- /src/fastqandfurious.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/src/fastqandfurious.py -------------------------------------------------------------------------------- /tests.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/tests.py -------------------------------------------------------------------------------- /throughput.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lgautier/fastq-and-furious/HEAD/throughput.svg --------------------------------------------------------------------------------