├── .gitignore ├── LICENSE.txt ├── Makefile ├── README.md ├── abreak.c ├── bam2bed.c ├── bam2fq.c ├── bamidx.c ├── bamshuf.c ├── bcfidx.c ├── bedidx.c ├── bgzip.c ├── boxver.h ├── depth.c ├── doc ├── BCFv2.tex └── index.tex ├── faidx.c ├── faidx.h ├── genreg.c ├── htslib ├── Makefile ├── bgzf.c ├── bgzf.h ├── hts.c ├── hts.h ├── khash.h ├── knetfile.c ├── knetfile.h ├── kseq.h ├── ksort.h ├── kstdint.h ├── kstring.h ├── kurl.c ├── kurl.h ├── sam.c ├── sam.h ├── tbx.c ├── tbx.h ├── vcf.c └── vcf.h ├── kthread.c ├── kvec.h ├── main.c ├── mapchk.c ├── peovlp.c ├── pileup.c ├── qualbin.c ├── razf.c ├── razf.h ├── razip.c ├── samsort.c ├── samview.c ├── tabix.c ├── test ├── ex1.gtf.gz ├── ex2.vcf └── ex3.sam └── vcfview.c /.gitignore: -------------------------------------------------------------------------------- 1 | *.o 2 | .*.swp 3 | -------------------------------------------------------------------------------- /LICENSE.txt: 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