├── .gitignore ├── LICENSE.txt ├── Makefile ├── README.md ├── bseq.c ├── bseq.h ├── example.c ├── index.c ├── kdq.h ├── khash.h ├── kseq.h ├── ksort.h ├── kthread.c ├── kvec.h ├── main.c ├── map.c ├── minimap.1 ├── minimap.h ├── misc.c ├── sdust.c ├── sdust.h └── sketch.c /.gitignore: -------------------------------------------------------------------------------- 1 | .*.swp 2 | *.o 3 | *.a 4 | -------------------------------------------------------------------------------- /LICENSE.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/LICENSE.txt -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/README.md -------------------------------------------------------------------------------- /bseq.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/bseq.c -------------------------------------------------------------------------------- /bseq.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/bseq.h -------------------------------------------------------------------------------- /example.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/example.c -------------------------------------------------------------------------------- /index.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/index.c -------------------------------------------------------------------------------- /kdq.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/kdq.h -------------------------------------------------------------------------------- /khash.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/khash.h -------------------------------------------------------------------------------- /kseq.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/kseq.h -------------------------------------------------------------------------------- /ksort.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/ksort.h -------------------------------------------------------------------------------- /kthread.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/kthread.c -------------------------------------------------------------------------------- /kvec.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/kvec.h -------------------------------------------------------------------------------- /main.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/main.c -------------------------------------------------------------------------------- /map.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/map.c -------------------------------------------------------------------------------- /minimap.1: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/minimap.1 -------------------------------------------------------------------------------- /minimap.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/minimap.h -------------------------------------------------------------------------------- /misc.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/misc.c -------------------------------------------------------------------------------- /sdust.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/sdust.c -------------------------------------------------------------------------------- /sdust.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/sdust.h -------------------------------------------------------------------------------- /sketch.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/minimap/HEAD/sketch.c --------------------------------------------------------------------------------