├── .gitignore ├── LICENSE.txt ├── Makefile ├── README.md ├── kalloc.c ├── kalloc.h ├── ketopt.h ├── kseq.h ├── main.c ├── nasw-s.c ├── nasw-sse.c ├── nasw-tab.c ├── nasw.h ├── s2n-lite.h └── test ├── DPP3-hs.gen.fa.gz ├── DPP3-hs.pep.fa.gz ├── DPP3-mm.pep.fa.gz ├── test-gn.fa └── test-gp.fa /.gitignore: -------------------------------------------------------------------------------- 1 | .*.swp 2 | *.o 3 | *.a 4 | Makefile.bak 5 | -------------------------------------------------------------------------------- /LICENSE.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/nasw/HEAD/LICENSE.txt -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/nasw/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/nasw/HEAD/README.md -------------------------------------------------------------------------------- /kalloc.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/nasw/HEAD/kalloc.c -------------------------------------------------------------------------------- /kalloc.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/nasw/HEAD/kalloc.h -------------------------------------------------------------------------------- /ketopt.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/nasw/HEAD/ketopt.h -------------------------------------------------------------------------------- /kseq.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/nasw/HEAD/kseq.h -------------------------------------------------------------------------------- /main.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/nasw/HEAD/main.c -------------------------------------------------------------------------------- /nasw-s.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/nasw/HEAD/nasw-s.c -------------------------------------------------------------------------------- /nasw-sse.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/nasw/HEAD/nasw-sse.c -------------------------------------------------------------------------------- /nasw-tab.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/nasw/HEAD/nasw-tab.c -------------------------------------------------------------------------------- /nasw.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/nasw/HEAD/nasw.h -------------------------------------------------------------------------------- /s2n-lite.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/nasw/HEAD/s2n-lite.h -------------------------------------------------------------------------------- /test/DPP3-hs.gen.fa.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/nasw/HEAD/test/DPP3-hs.gen.fa.gz -------------------------------------------------------------------------------- /test/DPP3-hs.pep.fa.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/nasw/HEAD/test/DPP3-hs.pep.fa.gz -------------------------------------------------------------------------------- /test/DPP3-mm.pep.fa.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/nasw/HEAD/test/DPP3-mm.pep.fa.gz -------------------------------------------------------------------------------- /test/test-gn.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/nasw/HEAD/test/test-gn.fa -------------------------------------------------------------------------------- /test/test-gp.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lh3/nasw/HEAD/test/test-gp.fa --------------------------------------------------------------------------------