├── __init__.py ├── hkjournalist ├── __init__.py ├── configuration │ └── code_block.tex └── journalist.py ├── requirements.txt ├── .gitattributes ├── demo ├── big_news.pdf ├── big_news.png ├── zh_demo.png ├── auto_report.pdf ├── auto_report.png ├── zh_big_news.pdf ├── template.md ├── auto_generate_template.md ├── auto_template_example.py └── quick_start_example.py ├── slides ├── slides.pdf ├── figures │ └── big_news.pdf ├── makefile ├── configuration │ └── code_block.tex └── main.md ├── docs ├── source │ ├── pic │ │ ├── zh_demo.png │ │ ├── big_news.png │ │ ├── auto_report.png │ │ ├── toturial_1_output.png │ │ └── toturial_2_output.png │ ├── modules.rst │ ├── hkjournalist.rst │ ├── template-generate.md │ ├── tutorial_2.md │ ├── quick-start.md │ ├── tutorial_1.md │ └── tutorial_3.md ├── Makefile ├── make.bat ├── index.rst └── conf.py ├── examples ├── reports │ ├── 3_zh_report.pdf │ ├── 2_feature_select.pdf │ ├── 1_prophet_report_2023-03-29_02:33:40.pdf │ ├── 3_zh_cn_template.md │ ├── 1_prophet_report_template.md │ └── 2_feature_select_template.md ├── 3_zh_CN_support.py ├── 2_feature_selection.py ├── 1_prophet_model_evaluate.py └── data │ └── example_wp_log_peyton_manning.csv ├── setup.py ├── LICENSE ├── README-zh_CN.md ├── .gitignore └── README.md /__init__.py: -------------------------------------------------------------------------------- 1 | name = 'hkjournalist' -------------------------------------------------------------------------------- /hkjournalist/__init__.py: -------------------------------------------------------------------------------- 1 | from hkjournalist.journalist import Journalist -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- 1 | pandas 2 | numpy 3 | matplotlib 4 | tabulate 5 | pandoc -------------------------------------------------------------------------------- /.gitattributes: -------------------------------------------------------------------------------- 1 | # Auto detect text files and perform LF normalization 2 | * text=auto 3 | -------------------------------------------------------------------------------- /demo/big_news.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/li-xin-yi/HK-journalist/HEAD/demo/big_news.pdf -------------------------------------------------------------------------------- /demo/big_news.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/li-xin-yi/HK-journalist/HEAD/demo/big_news.png -------------------------------------------------------------------------------- /demo/zh_demo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/li-xin-yi/HK-journalist/HEAD/demo/zh_demo.png -------------------------------------------------------------------------------- /slides/slides.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/li-xin-yi/HK-journalist/HEAD/slides/slides.pdf -------------------------------------------------------------------------------- /demo/auto_report.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/li-xin-yi/HK-journalist/HEAD/demo/auto_report.pdf -------------------------------------------------------------------------------- /demo/auto_report.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/li-xin-yi/HK-journalist/HEAD/demo/auto_report.png -------------------------------------------------------------------------------- /demo/zh_big_news.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/li-xin-yi/HK-journalist/HEAD/demo/zh_big_news.pdf -------------------------------------------------------------------------------- /docs/source/pic/zh_demo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/li-xin-yi/HK-journalist/HEAD/docs/source/pic/zh_demo.png -------------------------------------------------------------------------------- /slides/figures/big_news.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/li-xin-yi/HK-journalist/HEAD/slides/figures/big_news.pdf -------------------------------------------------------------------------------- /docs/source/pic/big_news.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/li-xin-yi/HK-journalist/HEAD/docs/source/pic/big_news.png -------------------------------------------------------------------------------- /docs/source/pic/auto_report.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/li-xin-yi/HK-journalist/HEAD/docs/source/pic/auto_report.png -------------------------------------------------------------------------------- /examples/reports/3_zh_report.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/li-xin-yi/HK-journalist/HEAD/examples/reports/3_zh_report.pdf -------------------------------------------------------------------------------- /docs/source/modules.rst: -------------------------------------------------------------------------------- 1 | hkjournalist 2 | ============ 3 | 4 | .. toctree:: 5 | :maxdepth: 4 6 | 7 | hkjournalist 8 | -------------------------------------------------------------------------------- /docs/source/pic/toturial_1_output.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/li-xin-yi/HK-journalist/HEAD/docs/source/pic/toturial_1_output.png -------------------------------------------------------------------------------- /docs/source/pic/toturial_2_output.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/li-xin-yi/HK-journalist/HEAD/docs/source/pic/toturial_2_output.png -------------------------------------------------------------------------------- /examples/reports/2_feature_select.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/li-xin-yi/HK-journalist/HEAD/examples/reports/2_feature_select.pdf -------------------------------------------------------------------------------- /examples/reports/1_prophet_report_2023-03-29_02:33:40.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/li-xin-yi/HK-journalist/HEAD/examples/reports/1_prophet_report_2023-03-29_02:33:40.pdf -------------------------------------------------------------------------------- /demo/template.md: -------------------------------------------------------------------------------- 1 | % Hello World 2 | % Xinyi Li 3 | % 2019-12-19 4 | --- 5 | 6 | ### Sine Plot 7 | 8 | ![]({sin_plot}) 9 | 10 | ### Sine Table 11 | 12 | {sin_table} 13 | 14 | ### Sine Function 15 | 16 | ```{{.python}} 17 | {sin_func} 18 | ``` 19 | -------------------------------------------------------------------------------- /demo/auto_generate_template.md: -------------------------------------------------------------------------------- 1 | % Report template 2 | % Author 3 | % {today} 4 | 5 | ### Plot_1 6 | 7 | ![]({Plot_1}){{ height=80%% }} 8 | 9 | ### Plot_2 10 | 11 | ![]({Plot_2}){{ height=80%% }} 12 | 13 | ### Plot_3 14 | 15 | ![]({Plot_3}){{ height=80%% }} 16 | 17 | -------------------------------------------------------------------------------- /examples/reports/3_zh_cn_template.md: -------------------------------------------------------------------------------- 1 | --- 2 | documentclass: ctexbeamer 3 | title: 中文报告 4 | author: 香港记者 5 | date: \today{{}} 6 | --- 7 | 8 | ### 正弦曲线 9 | 10 | ![]({sin_plot}) 11 | 12 | ### 正弦取值 13 | 14 | {sin_table} 15 | 16 | ### 正弦函数 17 | 18 | ```{{.python}} 19 | {sin_func} 20 | ``` 21 | 22 | 23 | -------------------------------------------------------------------------------- /slides/makefile: -------------------------------------------------------------------------------- 1 | all : 2 | pandoc -t beamer main.md --listings -H configuration/code_block.tex \ 3 | -o output.pdf 4 | 5 | slides : 6 | pandoc -t beamer main.md --listings -H configuration/code_block.tex \ 7 | -o slides.pdf 8 | 9 | tex : 10 | pandoc -t beamer main.md --listings -H configuration/code_block.tex \ 11 | -o source_code.tex 12 | 13 | ppt : 14 | pandoc -t main.md -o slides.pptx 15 | 16 | report : 17 | pandoc main.md -o report.pdf 18 | -------------------------------------------------------------------------------- /docs/source/hkjournalist.rst: -------------------------------------------------------------------------------- 1 | hkjournalist package 2 | ==================== 3 | 4 | Submodules 5 | ---------- 6 | 7 | hkjournalist.journalist module 8 | ------------------------------ 9 | 10 | .. automodule:: hkjournalist.journalist 11 | :members: 12 | :undoc-members: 13 | :show-inheritance: 14 | 15 | 16 | Module contents 17 | --------------- 18 | 19 | .. automodule:: hkjournalist 20 | :members: 21 | :undoc-members: 22 | :show-inheritance: 23 | -------------------------------------------------------------------------------- /examples/reports/1_prophet_report_template.md: -------------------------------------------------------------------------------- 1 | % Simple Model Test 2 | % Author 3 | % \today{{}} 4 | 5 | --- 6 | 7 | ### Data Plot 8 | 9 | ![]({data_plot}){{ width=100% }} 10 | 11 | ### Train set 12 | 13 | - **train end date** {train_end_date} 14 | - **seasonality** 15 | 16 | {seasonality} 17 | 18 | ### Prediction Result 19 | 20 | ![]({pred_plot}){{ width=100% }} 21 | 22 | ### Error analysis 23 | 24 | ```{{.python}} 25 | {metric_func} 26 | ``` 27 | 28 | ### Error analysis (plot) 29 | 30 | ![]({error_plot}){{ height=90% }} 31 | 32 | ### Note 33 | 34 | {note} 35 | -------------------------------------------------------------------------------- /demo/auto_template_example.py: -------------------------------------------------------------------------------- 1 | import numpy as np 2 | import matplotlib.pyplot as plt 3 | import seaborn as sns 4 | from hkjournalist import Journalist 5 | 6 | config = {} 7 | 8 | for i in range(1, 4): 9 | uniform_data = np.random.rand(10, 12) 10 | plt.figure(figsize=(10, 8)) 11 | ax = sns.heatmap(uniform_data, cmap='Blues', annot=True, linewidth=.5) 12 | plt.tight_layout() 13 | config[f'Plot_{i}'] = ax 14 | 15 | reporter = Journalist(fig_height='80%') 16 | reporter.hear(config) 17 | reporter.generate_template('auto_generate_template.md') 18 | reporter.report(output_file='auto_report.pdf', beamer=True, overwrite=True) 19 | -------------------------------------------------------------------------------- /examples/reports/2_feature_select_template.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: template 3 | author: Author 4 | date: \today{{}} 5 | --- 6 | ### Cover_type{{.allowframebreaks}} 7 | 8 | {Cover_type} 9 | 10 | ### shape 11 | 12 | {shape} 13 | 14 | ### dtypes{{.allowframebreaks}} 15 | 16 | {dtypes} 17 | 18 | ### skew{{.allowframebreaks}} 19 | 20 | {skew} 21 | 22 | ### description{{.allowframebreaks}} 23 | 24 | {description} 25 | 26 | ### Corr 27 | 28 | ![]({Corr}) 29 | 30 | ### select_method{{.fragile}} 31 | 32 | ```{{.python}} 33 | {select_method} 34 | ``` 35 | 36 | ### features_remain_with_thres_as_70{{.allowframebreaks}} 37 | 38 | {features_remain_with_thres_as_70} 39 | 40 | -------------------------------------------------------------------------------- /docs/Makefile: -------------------------------------------------------------------------------- 1 | # Minimal makefile for Sphinx documentation 2 | # 3 | 4 | # You can set these variables from the command line. 5 | SPHINXOPTS = 6 | SPHINXBUILD = sphinx-build 7 | SOURCEDIR = . 8 | BUILDDIR = _build 9 | 10 | # Put it first so that "make" without argument is like "make help". 11 | help: 12 | @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) 13 | 14 | 15 | .PHONY: help Makefile 16 | 17 | # Catch-all target: route all unknown targets to Sphinx using the new 18 | # "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). 19 | %: Makefile 20 | @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) -------------------------------------------------------------------------------- /slides/configuration/code_block.tex: -------------------------------------------------------------------------------- 1 | % Contents of listings-setup.tex 2 | \usepackage{xcolor} 3 | 4 | \lstset{ 5 | basicstyle=\ttfamily, 6 | numbers=left, 7 | keywordstyle=\color[rgb]{0.13,0.29,0.53}\bfseries, 8 | stringstyle=\color[rgb]{0.31,0.60,0.02}, 9 | commentstyle=\color[rgb]{0.56,0.35,0.01}\itshape, 10 | numberstyle=\footnotesize, 11 | stepnumber=1, 12 | numbersep=5pt, 13 | backgroundcolor=\color[RGB]{248,248,248}, 14 | showspaces=false, 15 | showstringspaces=false, 16 | showtabs=false, 17 | tabsize=2, 18 | captionpos=b, 19 | breaklines=true, 20 | breakatwhitespace=true, 21 | breakautoindent=true, 22 | escapeinside={\%*}{*)}, 23 | linewidth=\textwidth, 24 | basewidth=0.5em, 25 | } 26 | -------------------------------------------------------------------------------- /hkjournalist/configuration/code_block.tex: -------------------------------------------------------------------------------- 1 | % Contents of listings-setup.tex 2 | \usepackage{xcolor} 3 | 4 | \lstset{ 5 | basicstyle=\ttfamily, 6 | numbers=left, 7 | keywordstyle=\color[rgb]{0.13,0.29,0.53}\bfseries, 8 | stringstyle=\color[rgb]{0.31,0.60,0.02}, 9 | commentstyle=\color[rgb]{0.56,0.35,0.01}\itshape, 10 | numberstyle=\footnotesize, 11 | stepnumber=1, 12 | numbersep=5pt, 13 | backgroundcolor=\color[RGB]{248,248,248}, 14 | showspaces=false, 15 | showstringspaces=false, 16 | showtabs=false, 17 | tabsize=2, 18 | captionpos=b, 19 | breaklines=true, 20 | breakatwhitespace=true, 21 | breakautoindent=true, 22 | escapeinside={\%*}{*)}, 23 | linewidth=\textwidth, 24 | basewidth=0.5em, 25 | } 26 | -------------------------------------------------------------------------------- /docs/make.bat: -------------------------------------------------------------------------------- 1 | @ECHO OFF 2 | 3 | pushd %~dp0 4 | 5 | REM Command file for Sphinx documentation 6 | 7 | if "%SPHINXBUILD%" == "" ( 8 | set SPHINXBUILD=sphinx-build 9 | ) 10 | set SOURCEDIR=. 11 | set BUILDDIR=_build 12 | 13 | if "%1" == "" goto help 14 | 15 | %SPHINXBUILD% >NUL 2>NUL 16 | if errorlevel 9009 ( 17 | echo. 18 | echo.The 'sphinx-build' command was not found. Make sure you have Sphinx 19 | echo.installed, then set the SPHINXBUILD environment variable to point 20 | echo.to the full path of the 'sphinx-build' executable. Alternatively you 21 | echo.may add the Sphinx directory to PATH. 22 | echo. 23 | echo.If you don't have Sphinx installed, grab it from 24 | echo.http://sphinx-doc.org/ 25 | exit /b 1 26 | ) 27 | 28 | %SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% 29 | goto end 30 | 31 | :help 32 | %SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% 33 | 34 | :end 35 | popd 36 | -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- 1 | import setuptools 2 | 3 | with open("README.md", "r") as fh: 4 | long_description = fh.read() 5 | 6 | setuptools.setup( 7 | name="hkjournalist", 8 | version="0.0.8", 9 | author="Xinyi Li", 10 | author_email="wolixinyi@gmail.com", 11 | description="Custom Auto Report Generator for Python Program", 12 | long_description=long_description, 13 | long_description_content_type="text/markdown", 14 | url="https://github.com/li-xin-yi/HK-journalist", 15 | packages=setuptools.find_packages(), 16 | package_data={'configuration':['hkjournalist/configuration/*']}, 17 | include_package_data=True, 18 | classifiers=[ 19 | "Programming Language :: Python :: 3", 20 | "License :: OSI Approved :: MIT License" 21 | ], 22 | install_requires = ['tabulate', 23 | 'pandas', 24 | 'pandoc', 25 | 'matplotlib', 26 | ] 27 | ) 28 | -------------------------------------------------------------------------------- /demo/quick_start_example.py: -------------------------------------------------------------------------------- 1 | import matplotlib.pyplot as plt 2 | import numpy as np 3 | import pandas as pd 4 | from hkjournalist import Journalist 5 | 6 | config = {} 7 | 8 | def sin_2x_and_cos_2x(x): 9 | y = np.sin(x) * np.sin(x) + np.cos(x) * np.cos(x) 10 | return y 11 | 12 | x = np.arange(0, 4 * np.pi, 0.1) 13 | y1 = np.sin(x) 14 | y2 = np.cos(x) 15 | 16 | df = pd.DataFrame({'x': x, 'sin(x)': y1, 'cos(x)': y2}) 17 | df['sin^2^(x)+cos^2^(x)'] = sin_2x_and_cos_2x(df['x']).values 18 | df = df.set_index('x') 19 | 20 | # plot sine curve as sin_plot 21 | ax = df.plot() 22 | plt.tight_layout() 23 | config['sin_plot'] = ax 24 | 25 | # random select 5 point (x,y) as sin_table 26 | config['sin_table'] = df.sample(5) 27 | 28 | # sin_2x_and_cons_2x as sin_func 29 | config['sin_func'] = sin_2x_and_cos_2x 30 | 31 | # HK journalist runs faster than everyone! hear variable and make a report 32 | reporter = Journalist(template_file='template.md') 33 | reporter.hear(config) 34 | reporter.report(output_file='big_news.pdf', beamer=True, overwrite=True) 35 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | MIT License 2 | 3 | Copyright (c) 2019 Xinyi Li 4 | 5 | Permission is hereby granted, free of charge, to any person obtaining a copy 6 | of this software and associated documentation files (the "Software"), to deal 7 | in the Software without restriction, including without limitation the rights 8 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 9 | copies of the Software, and to permit persons to whom the Software is 10 | furnished to do so, subject to the following conditions: 11 | 12 | The above copyright notice and this permission notice shall be included in all 13 | copies or substantial portions of the Software. 14 | 15 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 16 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 17 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 18 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 19 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 20 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE 21 | SOFTWARE. -------------------------------------------------------------------------------- /examples/3_zh_CN_support.py: -------------------------------------------------------------------------------- 1 | import os 2 | import sys 3 | import numpy as np 4 | import pandas as pd 5 | import matplotlib.pyplot as plt 6 | 7 | SCRIPT_DIR = os.path.dirname(os.path.abspath(__file__)) 8 | sys.path.append(os.path.dirname(SCRIPT_DIR)) 9 | 10 | from hkjournalist import Journalist 11 | 12 | 13 | config = {} 14 | 15 | 16 | def sin_2x_and_cos_2x(x): 17 | y = np.sin(x) * np.sin(x) + np.cos(x) * np.cos(x) 18 | return y 19 | 20 | 21 | x = np.arange(0, 4 * np.pi, 0.1) 22 | y1 = np.sin(x) 23 | y2 = np.cos(x) 24 | 25 | df = pd.DataFrame({'x': x, 'sin(x)': y1, 'cos(x)': y2}) 26 | df['sin^2^(x)+cos^2^(x)'] = sin_2x_and_cos_2x(df['x']).values 27 | df = df.set_index('x') 28 | 29 | # plot sine curve as sin_plot 30 | ax = df.plot() 31 | plt.tight_layout() 32 | config['sin_plot'] = ax 33 | 34 | # random select 5 point (x,y) as sin_table 35 | config['sin_table'] = df.sample(5) 36 | 37 | config['sin_func'] = sin_2x_and_cos_2x 38 | 39 | reporter = Journalist(template_file='./reports/3_zh_cn_template.md', zh=True) 40 | reporter.hear(config) 41 | reporter.report(output_file='./reports/3_zh_report.pdf', beamer=True, overwrite=True) 42 | -------------------------------------------------------------------------------- /docs/source/template-generate.md: -------------------------------------------------------------------------------- 1 | # Auto Generate `md` Template 2 | 3 | ## I am too lazy to write a `md` template 4 | 5 | If you have too many variables to report, which make write a template a big project, or simply don't want to write a `md` template, **No problem!** `hkjournalist` can generate a report template with each variable on one slide page automatically. With slight modification or directly using it as a template, you can get your real report. 6 | 7 | ## Example 8 | 9 | ```py 10 | import numpy as np 11 | import matplotlib.pyplot as plt 12 | import seaborn as sns 13 | from hkjournalist import Journalist 14 | 15 | config = {} 16 | 17 | for i in range(1, 4): 18 | uniform_data = np.random.rand(10, 12) 19 | plt.figure(figsize=(10, 8)) 20 | ax = sns.heatmap(uniform_data, cmap='Blues', annot=True, linewidth=.5) 21 | plt.tight_layout() 22 | config[f'Plot_{i}'] = ax 23 | 24 | reporter = Journalist(fig_height='80%') 25 | reporter.hear(config) 26 | reporter.generate_template('auto_generate_template.md') 27 | reporter.report(output_file='auto_report.pdf', beamer=True, overwrite=True) 28 | ``` 29 | Output ([raw file](https://github.com/li-xin-yi/HK-journalist/blob/master/demo/auto_report.pdf) ): 30 | 31 | ![](./pic/auto_report.png) 32 | -------------------------------------------------------------------------------- /examples/2_feature_selection.py: -------------------------------------------------------------------------------- 1 | from hkjournalist import Journalist 2 | import os 3 | import sys 4 | import numpy as np 5 | import pandas as pd 6 | import matplotlib.pyplot as plt 7 | import seaborn as sns 8 | 9 | SCRIPT_DIR = os.path.dirname(os.path.abspath(__file__)) 10 | sys.path.append(os.path.dirname(SCRIPT_DIR)) 11 | 12 | 13 | # data from https://www.kaggle.com/c/forest-cover-type-prediction/data 14 | 15 | 16 | config = {} 17 | 18 | df = pd.read_csv('./data/train.csv') 19 | df = df.iloc[:, 1:] 20 | feature_df = df.loc[:, :'Horizontal_Distance_To_Fire_Points'] 21 | 22 | # basic statistics feature 23 | config['Cover_type'] = df.groupby('Cover_Type').size() 24 | config['shape'] = df.shape 25 | config['dtypes'] = feature_df.dtypes 26 | config['skew'] = feature_df.skew() 27 | config['description'] = feature_df.describe() 28 | 29 | # filter features with high correlation coefficient 30 | data_corr = feature_df.corr() 31 | plt.figure(figsize=(8, 6)) 32 | grid = sns.heatmap(data_corr, annot=True, fmt='.2f', 33 | cmap='RdBu', center=0, linewidth=.5) 34 | plt.tight_layout() 35 | config['Corr'] = grid 36 | 37 | 38 | def drop_by_cor(feature_df, threshold=0.9): 39 | corr_matrix = feature_df.corr().abs() 40 | upper = corr_matrix.where( 41 | np.triu(np.ones(corr_matrix.shape), k=1).astype(np.bool)) 42 | to_drop = [column for column in upper.columns if any( 43 | upper[column] > threshold)] 44 | return to_drop 45 | 46 | 47 | config['select_method'] = drop_by_cor 48 | threshold = 0.7 49 | 50 | valid_features = list(set(feature_df.columns) - 51 | set(drop_by_cor(feature_df, threshold))) 52 | config[f'features_remain_with_thres_as_{int(threshold * 100)}'] = valid_features 53 | 54 | # report generate without any pre-defined markdown template 55 | report_journalist = Journalist() 56 | report_journalist.hear(config) 57 | report_journalist.generate_template('./reports/2_feature_select_template.md') 58 | report_journalist.report('./reports/2_feature_select.pdf', 59 | overwrite=True, beamer=True, aspectratio=169) 60 | -------------------------------------------------------------------------------- /README-zh_CN.md: -------------------------------------------------------------------------------- 1 | 做了一个可以自己定制md模板，并在每次运行程序化自动生成相应报告的库。现已发布到pypi，欢迎试用。 2 | 3 | - 实现原理初步构想： https://zhuanlan.zhihu.com/p/96675335 4 | - GitHub项目主页：https://github.com/li-xin-yi/HK-journalist 5 | - 完整文档地址：https://hk-journalist.readthedocs.io/en/latest/ 6 | 7 | ``` 8 | pip install hkjournalist 9 | ``` 10 | ## Features 11 | - 可以自己用Markdown写报告的生成模板，这对于熟悉md写作的人比较友好 12 | - 生成的pdf报告为slide形式，可以直接投影讲解给其他合作者，自己阅读也方便。同时保证了图片的矢量性和高品质，文件大小也十分轻量。 13 | - 可以自动在输出文件名上加上时间戳，形成多次改动的snapshot效果，这对于频繁调参的使用者来说非常有用。 14 | - 支持plot，dataframe，函数，字符串列表这四种特殊类型在报告中以更加优雅容易阅读的形式呈现 15 | - **可以自动根据需要report的变量类型生成模板**。再也不用担心懒得写markdown模板的问题了。 16 | - 除了维护存储变量名-值映射关系的dict，用以生成报告的Python代码只需要3-4行 17 | 18 | ## Demo 19 | 一个非常简单的例子，自己写一个类似这样的报告模板，遵循一般的markdown语法，除了用{}包裹了变量名，让它在程序运行时由运行环境来决定。 20 | ```` 21 | % Hello World 22 | % Xinyi Li 23 | % 2019-12-19 24 | 25 | --- 26 | 27 | ### sine plot 28 | 29 | ![]({sin_plot}) 30 | 31 | ### sine table 32 | 33 | {sin_table} 34 | 35 | ### sine function 36 | 37 | ```{{.python}} 38 | {sin_func} 39 | ``` 40 | ```` 41 | 42 | 也就是说变量`sin_plot`, `sin_table`, `sin_func`都需要在你的python程序中获取。获取的方法是定义一个dict来保存它们的名字和真实值之间的映射关系： 43 | 44 | ```py 45 | from hkjournalist import Journalist 46 | 47 | config = {} 48 | ``` 49 | 50 | 接下来开始你的表演，及时的把它们的值绑定对应的变量名： 51 | ```py 52 | def sin_2x_and_cos_2x(x): 53 | y = np.sin(x) * np.sin(x) + np.cos(x) * np.cos(x) 54 | return y 55 | 56 | x = np.arange(0, 4 * np.pi, 0.1) 57 | y1 = np.sin(x) 58 | y2 = np.cos(x) 59 | 60 | df = pd.DataFrame({'x': x, 'sin(x)': y1, 'cos(x)': y2}) 61 | df['sin^2^(x)+cos^2^(x)'] = sin_2x_and_cos_2x(df['x']).values 62 | df = df.set_index('x') 63 | 64 | # plot sine curve as sin_plot 65 | ax = df.plot() 66 | plt.tight_layout() 67 | config['sin_plot'] = ax 68 | 69 | # random select 5 point (x,y) as sin_table 70 | config['sin_table'] = df.sample(5) 71 | 72 | # sin_2x_and_cons_2x as sin_func 73 | config['sin_func'] = sin_2x_and_cos_2x 74 | ``` 75 | 76 | 最后添加3行关键代码 77 | 78 | ```py 79 | reporter = Journalist(template_file='template.md') 80 | reporter.hear(config) 81 | reporter.report(output_file='big_news.pdf', beamer=True, overwrite=True) 82 | ``` 83 | 然后你就可以看见最终的pdf报告 84 | ![](./demo/big_news.png) 85 | 原始的pdf文件可以去github对应目录下查看，上面已经把4页打印在一起了。 86 | 最后祝您使用愉快，程序跑的比谁都快。 87 | -------------------------------------------------------------------------------- /docs/index.rst: -------------------------------------------------------------------------------- 1 | .. HKJournalist documentation master file, created by 2 | sphinx-quickstart on Fri Dec 20 16:29:31 2019. 3 | You can adapt this file completely to your liking, but it should at least 4 | contain the root `toctree` directive. 5 | 6 | Welcome to HKJournalist's documentation! 7 | ======================================== 8 | 9 | |Python_Versions|_ |PyPI_Version|_ |GitHub|_ |TexLive|_ 10 | 11 | .. |Python_Versions| image:: https://img.shields.io/pypi/pyversions/hkjournalist.svg 12 | .. _Python_Versions: https://pypi.org/project/hkjournalist 13 | 14 | .. |PyPI_Version| image:: https://img.shields.io/pypi/v/hkjournalist.svg 15 | .. _PyPI_Version: https://pypi.org/project/hkjournalist 16 | 17 | .. |GitHub| image:: https://img.shields.io/github/forks/li-xin-yi/hk-journalist?style=social.svg 18 | .. _GitHub: https://github.com/li-xin-yi/hk-journalist/fork 19 | 20 | .. |TexLive| image:: https://img.shields.io/badge/TeXLive-2018/2019-important.svg 21 | .. _TexLive: https://www.tug.org/texlive/ 22 | 23 | * Slides for sharing: `Download Link `_ 24 | 25 | It is a light and useful Python module, helping you generate a small size, pretty report as PDF slides (or any other format documents which human can directly read and hand out) each time after your programs finish. All you need to do is to customize a report template using ``MarkDown`` with variables name which used in your Python program, and maintain a ``dict`` to store those variables. Then, A few lines of code added before end of programs can automatically fetch and display them in final report file. Also, code deal with frequent structure/arguments changes or data source changes can benefit from the package if the report can play a role of 'snapshot' (with timestamp) of each code version. 26 | 27 | .. toctree:: 28 | :maxdepth: 2 29 | :caption: Home: 30 | 31 | Quick Start 32 | Auto Generate Template 33 | Tutorial 1: Run a prophet model on time series 34 | Tutorial 2: EDA and select feature 35 | Tutorial 3: Write templates with Chinese characters 36 | API 37 | 38 | 39 | 40 | Indices and tables 41 | ================== 42 | 43 | * :ref:`genindex` 44 | * :ref:`modindex` 45 | * :ref:`search` 46 | -------------------------------------------------------------------------------- /docs/source/tutorial_2.md: -------------------------------------------------------------------------------- 1 | # Tutorial 2: EDA and select feature 2 | 3 | - Code and output: [example/2\_feature\_selection.py](https://github.com/li-xin-yi/HK-journalist/blob/master/examples/2_feature_selection.py) 4 | - Data from [Kaggle Contest](https://www.kaggle.com/c/forest-cover-type-prediction/data) 5 | 6 | 7 | ## Load Data and pass basic statistics data to `config` 8 | 9 | ```py 10 | import numpy as np 11 | import pandas as pd 12 | import matplotlib.pyplot as plt 13 | import seaborn as sns 14 | from hkjournalist import Journalist 15 | 16 | config = {} 17 | 18 | df = pd.read_csv('./data/train.csv') 19 | df = df.iloc[:, 1:] 20 | feature_df = df.loc[:, :'Horizontal_Distance_To_Fire_Points'] 21 | 22 | # basic statistics feature 23 | config['Cover_type'] = df.groupby('Cover_Type').size() 24 | config['shape'] = df.shape 25 | config['dtypes'] = feature_df.dtypes 26 | config['skew'] = feature_df.skew() 27 | config['description'] = feature_df.describe() 28 | ``` 29 | 30 | ## Plot the correlation matrix 31 | 32 | ```py 33 | data_corr = feature_df.corr() 34 | plt.figure(figsize=(8, 6)) 35 | grid = sns.heatmap(data_corr, annot=True, fmt='.2f', cmap='RdBu', center=0, linewidth=.5) 36 | plt.tight_layout() 37 | config['Corr'] = grid 38 | ``` 39 | 40 | ## Filter features with high correlation coefficient 41 | 42 | ```py 43 | def drop_by_cor(feature_df, threshold=0.9): 44 | corr_matrix = feature_df.corr().abs() 45 | upper = corr_matrix.where(np.triu(np.ones(corr_matrix.shape), k=1).astype(np.bool)) 46 | to_drop = [column for column in upper.columns if any(upper[column] > threshold)] 47 | return to_drop 48 | 49 | 50 | config['select_method'] = drop_by_cor 51 | threshold = 0.7 52 | 53 | valid_features = list(set(feature_df.columns) - set(drop_by_cor(feature_df, threshold))) 54 | config[f'features_remain_with_thres_as_{int(threshold * 100)}'] = valid_features 55 | ``` 56 | 57 | Too many variables to write a template by hand? don't worry, just call `generate_template` method! 58 | 59 | ## HKJournalist can use auto-generated template before making a big report! 60 | 61 | ```py 62 | report_journalist = Journalist() 63 | report_journalist.hear(config) 64 | report_journalist.generate_template('./reports/2_feature_select_template.md') 65 | report_journalist.report('./reports/2_feature_select.pdf', overwrite=True, beamer=True, aspectratio=169) 66 | ``` 67 | 68 | ## Output 69 | 70 | raw file: [./reports/2_feature_select.pdf](https://github.com/li-xin-yi/HK-journalist/blob/master/examples/reports/2_feature_select.pdf) 71 | 72 | ![](./pic/toturial_2_output.png) 73 | -------------------------------------------------------------------------------- /docs/conf.py: -------------------------------------------------------------------------------- 1 | # Configuration file for the Sphinx documentation builder. 2 | # 3 | # This file only contains a selection of the most common options. For a full 4 | # list see the documentation: 5 | # http://www.sphinx-doc.org/en/master/config 6 | 7 | # -- Path setup -------------------------------------------------------------- 8 | 9 | # If extensions (or modules to document with autodoc) are in another directory, 10 | # add these directories to sys.path here. If the directory is relative to the 11 | # documentation root, use os.path.abspath to make it absolute, like shown here. 12 | # 13 | import os 14 | import sys 15 | #sys.path.insert(0, os.path.abspath('.')) 16 | sys.path.insert(0, os.path.abspath('..')) 17 | 18 | import sphinx_rtd_theme 19 | 20 | 21 | # -- Project information ----------------------------------------------------- 22 | 23 | project = 'HKJournalist' 24 | copyright = '2019, Xinyi Li' 25 | author = 'Xinyi Li' 26 | 27 | 28 | # -- General configuration --------------------------------------------------- 29 | 30 | # Add any Sphinx extension module names here, as strings. They can be 31 | # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom 32 | # ones. 33 | extensions = [ 34 | 'sphinx.ext.autodoc', 35 | 'sphinx.ext.napoleon', 36 | 'sphinx.ext.viewcode', 37 | 'sphinx.ext.autosummary' 38 | ] 39 | 40 | source_suffix = ['.rst', '.md'] 41 | master_doc = 'index' 42 | 43 | pygments_style = 'sphinx' 44 | 45 | 46 | # Add any paths that contain templates here, relative to this directory. 47 | templates_path = ['_templates'] 48 | 49 | # List of patterns, relative to source directory, that match files and 50 | # directories to ignore when looking for source files. 51 | # This pattern also affects html_static_path and html_extra_path. 52 | exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] 53 | 54 | autoclass_content = 'both' 55 | 56 | 57 | # -- Options for HTML output ------------------------------------------------- 58 | 59 | # The theme to use for HTML and HTML Help pages. See the documentation for 60 | # a list of builtin themes. 61 | # 62 | # html_theme = 'alabaster' 63 | html_theme = 'sphinx_rtd_theme' 64 | html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] 65 | # Add any paths that contain custom static files (such as style sheets) here, 66 | # relative to this directory. They are copied after the builtin static files, 67 | # so a file named "default.css" will overwrite the builtin "default.css". 68 | html_static_path = ['_static'] 69 | 70 | source_parsers = { 71 | '.md': 'recommonmark.parser.CommonMarkParser', 72 | } 73 | -------------------------------------------------------------------------------- /examples/1_prophet_model_evaluate.py: -------------------------------------------------------------------------------- 1 | from prophet import Prophet 2 | from hkjournalist import Journalist 3 | import os 4 | import sys 5 | import pandas as pd 6 | import matplotlib.pyplot as plt 7 | import seaborn as sns 8 | 9 | SCRIPT_DIR = os.path.dirname(os.path.abspath(__file__)) 10 | sys.path.append(os.path.dirname(SCRIPT_DIR)) 11 | 12 | 13 | # data and models from fbprophet tutorials https://facebook.github.io/prophet/docs/quick_start.html#python-api 14 | # markdown report template './reports/simple_model_report_template.md' 15 | 16 | sns.set(style="darkgrid") 17 | 18 | # maintain a dict to record all variables used in reports 19 | config = {} 20 | 21 | # load data 22 | df = pd.read_csv('./data/example_wp_log_peyton_manning.csv') 23 | df['ds'] = pd.to_datetime(df['ds']) 24 | 25 | # plot full data set (time series) 26 | ax = df.set_index('ds').plot(figsize=(20, 10)) 27 | plt.tight_layout() 28 | config['data_plot'] = ax 29 | 30 | # train/test split 31 | train_end_date = '20131231' 32 | config['train_end_date'] = train_end_date 33 | train_df = df[df['ds'] <= train_end_date] 34 | test_df = df[df['ds'] > train_end_date] 35 | 36 | test_df['year'] = test_df['ds'].dt.year 37 | test_df['month'] = test_df['ds'].dt.month 38 | 39 | # model build 40 | model = Prophet(weekly_seasonality=True, yearly_seasonality=True) 41 | model.add_seasonality('monthly', period=30.5, fourier_order=12, prior_scale=10) 42 | model.add_seasonality('quarter', period=364.5 / 4, 43 | fourier_order=10, prior_scale=5) 44 | 45 | # model train & test 46 | model.fit(train_df) 47 | config['seasonality'] = pd.DataFrame(model.seasonalities) 48 | test_df['y_pred'] = model.predict(test_df[['ds']])['yhat'].values 49 | ax = test_df[['ds', 'y', 'y_pred']].set_index( 50 | 'ds').plot(figsize=(20, 10)) # plot predict result 51 | plt.tight_layout() 52 | config['pred_plot'] = ax 53 | 54 | 55 | # define a new kpi metric according to rules 56 | def kpi_mape(df, y_true, y_pred): 57 | # mape group by yearmonth 58 | df[y_pred].clip(0, None, inplace=True) 59 | df['diff'] = abs(df[y_true] - df[y_pred]) 60 | mape_df = df.groupby(['year', 'month']).agg( 61 | {'diff': 'sum', y_true: 'sum'}).reset_index() 62 | mape_df['mape'] = mape_df['diff'] / mape_df[y_true] 63 | res_df = mape_df.pivot(index='month', columns='year', values='mape') 64 | return res_df 65 | 66 | 67 | config['metric_func'] = kpi_mape 68 | 69 | # evaluate prediction on test set 70 | kpi_df = kpi_mape(test_df, 'y', 'y_pred') 71 | plt.figure(figsize=(4, 6)) 72 | ax = sns.heatmap(kpi_df, annot=True, cmap='YlGn', linewidth=.5, fmt='.2f') 73 | plt.tight_layout() 74 | config['error_plot'] = ax 75 | 76 | # record extra info about model 77 | config['note'] = "Prophet with no holidays info" 78 | 79 | # Besides maintaining config dict, all code you need to generate reports is simply 3 lines below: 80 | report_journalist = Journalist( 81 | template_file='./reports/1_prophet_report_template.md') 82 | report_journalist.hear(config) 83 | report_journalist.report( 84 | output_file='./reports/1_prophet_report.pdf', beamer=True, overwrite=False) 85 | -------------------------------------------------------------------------------- /docs/source/quick-start.md: -------------------------------------------------------------------------------- 1 | # Quick Start 2 | 3 | ## Pre-requirements 4 | 5 | Before installing `hkjournalist`, please make sure `pandoc` and `pdflatex` are already properly installed in the environment. 6 | 7 | - `pandoc`: [pandoc.org/installing.html](https://pandoc.org/installing.html) 8 | - `texlive`/`mactex`(for MacOS): [www.tug.org/texlive/ http://www.tug.org/mactex/](https://www.tug.org/texlive/ http://www.tug.org/mactex/) 9 | 10 | ## Install 11 | 12 | ``` 13 | pip install hkjournalist 14 | ``` 15 | 16 | ## Customize your report template 17 | 18 | Write such a `md` file, use a pair of `{}` to wrap every variable which will be assigned specified value in your code. save it to `template.md` 19 | 20 | ````md 21 | % Hello World 22 | % Xinyi Li 23 | % 2019-12-19 24 | 25 | --- 26 | 27 | ### sine plot 28 | 29 | ![]({sin_plot}) 30 | 31 | ### sine table 32 | 33 | {sin_table} 34 | 35 | ### sine function 36 | 37 | ```{{.python}} 38 | {sin_func} 39 | ``` 40 | 41 | ```` 42 | 43 | ## Run a `Journalist()` in your code to fetch variables 44 | 45 | First, you should define a `dict` to record mapping with variable names and their value 46 | 47 | ```py 48 | from hkjournalist import Journalist 49 | 50 | config = {} 51 | ``` 52 | 53 | 54 | Then, start your programming, and do not forget to assign value to corresponding variable names in `config`: 55 | ```py 56 | def sin_2x_and_cos_2x(x): 57 | y = np.sin(x) * np.sin(x) + np.cos(x) * np.cos(x) 58 | return y 59 | 60 | x = np.arange(0, 4 * np.pi, 0.1) 61 | y1 = np.sin(x) 62 | y2 = np.cos(x) 63 | 64 | df = pd.DataFrame({'x': x, 'sin(x)': y1, 'cos(x)': y2}) 65 | df['sin^2^(x)+cos^2^(x)'] = sin_2x_and_cos_2x(df['x']).values 66 | df = df.set_index('x') 67 | 68 | # plot sine curve as sin_plot 69 | ax = df.plot() 70 | plt.tight_layout() 71 | config['sin_plot'] = ax 72 | 73 | # random select 5 point (x,y) as sin_table 74 | config['sin_table'] = df.sample(5) 75 | 76 | # sin_2x_and_cons_2x as sin_func 77 | config['sin_func'] = sin_2x_and_cos_2x 78 | ``` 79 | 80 | ## Invite a journalist to make a big news report 81 | 82 | Last but not least, attach 3 lines **critical** code below to have your `Journalist` make a report and save it to `big_news.pdf` (you can get all code above in [demo](https://github.com/li-xin-yi/HK-journalist/tree/master/demo) and the output file [big_news.pdf](https://github.com/li-xin-yi/HK-journalist/blob/master/demo/big_news.pdf)) 83 | 84 | ```py 85 | # HK journalist runs faster than everyone! hear variable and make a report 86 | reporter = Journalist(template_file='template.md') 87 | reporter.hear(config) 88 | reporter.report(output_file='big_news.pdf', beamer=True, overwrite=True) 89 | ``` 90 | 91 | Report slides display as below: 92 | ![](./pic/big_news.png) 93 | 94 | ## Final question: What will my variables on slides look like? 95 | 96 | All variables pass to `Journalist` via `hear` will display as strings just like what their `__str__` method do. 97 | 98 | Except for 4 types with special support: 99 | 100 | - `pandas.DataFrame`: -> a 3-line table (`TeX` default style) 101 | - `matplotlib.axes.SubplotBase` (known as base figure object `ax` in `matplotlib`): -> a figure print on report (with high quality and small size as `pdf`) 102 | - `function`: -> its full definition 103 | - `list(str)`: -> `len(list)` followed by a sentance with all words concatenated. 104 | -------------------------------------------------------------------------------- /docs/source/tutorial_1.md: -------------------------------------------------------------------------------- 1 | # Tutorial 1: Run a prophet model on time series 2 | 3 | - Code and output: [example/1\_prophet\_model\_evalute.py](https://github.com/li-xin-yi/HK-journalist/blob/master/examples/1_prophet_model_evaluate.py) 4 | - Data and model usage from [`fbprophet` tutorials](https://facebook.github.io/prophet/docs/quick_start.html#python-api) 5 | 6 | 7 | ## Prepare a `dict` to store variables 8 | 9 | ```py 10 | import pandas as pd 11 | import matplotlib.pyplot as plt 12 | import seaborn as sns 13 | from hkjournalist import Journalist 14 | from fbprophet import Prophet 15 | 16 | sns.set(style="darkgrid") 17 | 18 | # maintain a dict to record all variables used in reports 19 | config = {} 20 | ``` 21 | 22 | ## Load data 23 | 24 | ```py 25 | df = pd.read_csv('./data/example_wp_log_peyton_manning.csv') 26 | df['ds'] = pd.to_datetime(df['ds']) 27 | ``` 28 | 29 | ## Plot data 30 | 31 | ```py 32 | ax = df.set_index('ds').plot(figsize=(20, 10)) 33 | plt.tight_layout() 34 | config['data_plot'] = ax 35 | ``` 36 | 37 | ## Split train and test set 38 | 39 | ```py 40 | train_end_date = '20131231' 41 | config['train_end_date'] = train_end_date 42 | train_df = df[df['ds'] <= train_end_date] 43 | test_df = df[df['ds'] > train_end_date] 44 | 45 | test_df['year'] = test_df['ds'].dt.year 46 | test_df['month'] = test_df['ds'].dt.month 47 | ``` 48 | 49 | ## Build a model 50 | 51 | ```py 52 | model = Prophet(weekly_seasonality=True, yearly_seasonality=True) 53 | model.add_seasonality('monthly', period=30.5, fourier_order=12, prior_scale=10) 54 | model.add_seasonality('quarter', period=364.5 / 4, fourier_order=10, prior_scale=5) 55 | ``` 56 | Seasonalities are import hyper-parameters of a `Prophet` model, which should be recorded every time. 57 | 58 | ## Fit this model and plot the prediction 59 | 60 | The final plot should also be reported. 61 | 62 | ```py 63 | model.fit(train_df) 64 | config['seasonality'] = pd.DataFrame(model.seasonalities) 65 | test_df['y_pred'] = model.predict(test_df[['ds']])['yhat'].values 66 | ax = test_df[['ds', 'y', 'y_pred']].set_index('ds').plot(figsize=(20, 10)) # plot predict result 67 | plt.tight_layout() 68 | config['pred_plot'] = ax 69 | ``` 70 | 71 | ## Define a custom metric to evaluate model 72 | 73 | And the metric definition should be exposed to others 74 | 75 | ```py 76 | def kpi_mape(df, y_true, y_pred): 77 | # mape group by yearmonth 78 | df[y_pred] = df[y_pred].clip(0, None) 79 | df['diff'] = abs(df[y_true] - df[y_pred]) 80 | mape_df = df.groupby(['year', 'month']).agg({'diff': 'sum', y_true: 'sum'}).reset_index() 81 | mape_df['mape'] = mape_df['diff'] / mape_df[y_true] 82 | res_df = mape_df.pivot(index='month', columns='year', values='mape') 83 | return res_df 84 | 85 | config['metric_func'] = kpi_mape 86 | ``` 87 | 88 | ## Detail data for error analysis 89 | 90 | ```py 91 | kpi_df = kpi_mape(test_df, 'y', 'y_pred') 92 | plt.figure(figsize=(4, 6)) 93 | ax = sns.heatmap(kpi_df, annot=True, cmap='YlGn', linewidth=.5, fmt='.2f') 94 | plt.tight_layout() 95 | config['error_plot'] = ax 96 | ``` 97 | 98 | ## Add some personal note to describe your model 99 | 100 | ```py 101 | config['note'] = "Prophet with no holidays info" 102 | ``` 103 | 104 | 105 | ## Finally, here comes the `Journalist`! 106 | 107 | ```py 108 | report_journalist = Journalist(template_file='./reports/1_prophet_report_template.md') 109 | report_journalist.hear(config) 110 | report_journalist.report(output_file='./reports/1_prophet_report.pdf', beamer=True, overwrite=False) 111 | ``` 112 | 113 | ## Output slides 114 | 115 | raw file: [examples/reports/1_prophet_report_2019-12-18_22:06:18.pdf](https://github.com/li-xin-yi/HK-journalist/blob/master/examples/reports/1_prophet_report_2019-12-18_22:06:18.pdf) 116 | 117 | ![](./pic/toturial_1_output.png) 118 | -------------------------------------------------------------------------------- /docs/source/tutorial_3.md: -------------------------------------------------------------------------------- 1 | # Write templates with Chinese characters 2 | 3 | *(new feature from 0.0.5)* 4 | 5 | Now, `HKJournalist` can generate reports from templates that contain Chinese Characters. In other words, we can write reports using `zh_CN`. 6 | 7 | ## Pre-requirements 8 | 9 | First of all, you should check if [XeLaTeX](https://www.tug.org/xetex/) is installed properly in your environment. It is always integrated in [TeXLive](https://www.tug.org/texlive/) /[MacTeX](https://tug.org/mactex/). 10 | 11 | Then, make sure you have already installed target Chinese fonts. 12 | 13 | ## Specify the header in `md` template 14 | 15 | In the YAML metadata block, you should specify the CJK font used by the report. To simplify, For slides, we just specify `documnetclass` in which the font is already defined: *(it is what exactly `HKJournalist` do when asked to automatically give a chinese report template)* 16 | 17 | 18 | ```yaml 19 | --- 20 | documentclass: ctexbeamer 21 | title: 中文报告 22 | author: 香港记者 23 | date: \today{{}} 24 | --- 25 | ``` 26 | 27 | Or you can replace the first line with a font declaration, such as: 28 | 29 | ```yaml 30 | # for windows 31 | CJKmainfont: KaiTi 32 | # Or for Linux 33 | mainfont: WenQuanYi Micro Hei Mono 34 | ``` 35 | 36 | **Note**: the line about font or `documentclass` should be placed at first in the block. 37 | 38 | **Note**: `\today{}` is a command that will be replaced by the actual date in proper format in the final report. To escape `{}`, it should be as `\today{{}}` in a template. 39 | 40 | ## Write main part of your program 41 | 42 | In general, there is nothing noteworthy in this part. Codes used in this example is exactly the same as the one in [Quick Start](./quick-start.md). 43 | 44 | ```python 45 | import numpy as np 46 | import pandas as pd 47 | import matplotlib.pyplot as plt 48 | from hkjournalist import Journalist 49 | 50 | config = {} 51 | 52 | 53 | def sin_2x_and_cos_2x(x): 54 | y = np.sin(x) * np.sin(x) + np.cos(x) * np.cos(x) 55 | return y 56 | 57 | 58 | x = np.arange(0, 4 * np.pi, 0.1) 59 | y1 = np.sin(x) 60 | y2 = np.cos(x) 61 | 62 | df = pd.DataFrame({'x': x, 'sin(x)': y1, 'cos(x)': y2}) 63 | df['sin^2^(x)+cos^2^(x)'] = sin_2x_and_cos_2x(df['x']).values 64 | df = df.set_index('x') 65 | 66 | # plot sine curve as sin_plot 67 | ax = df.plot() 68 | plt.tight_layout() 69 | config['sin_plot'] = ax 70 | 71 | # random select 5 point (x,y) as sin_table 72 | config['sin_table'] = df.sample(5) 73 | 74 | config['sin_func'] = sin_2x_and_cos_2x 75 | ``` 76 | 77 | However, you should always be careful on the encoding of your code/text files, especially when chinese characters probably occur in strings. Please ensure your files are always read and written under `UTF-8` encoding. 78 | 79 | And the rest part of [`md` template](https://github.com/li-xin-yi/HK-journalist/blob/master/examples/reports/3_zh_cn_template.md) is: 80 | 81 | ```markdown 82 | ### 正弦曲线 83 | 84 | ![]({sin_plot}) 85 | 86 | ### 正弦取值 87 | 88 | {sin_table} 89 | 90 | ### 正弦函数 91 | 92 | ```{{.python}} 93 | {sin_func} 94 | ``` 95 | 96 | 97 | ## Turn on `zh` 98 | 99 | When constructing a `HKJournalist` instance, Turn on its `zh-CN` support by using `zh=True` argument. 100 | 101 | ```python 102 | reporter = Journalist(template_file='./reports/3_zh_cn_template.md', zh=True) 103 | ``` 104 | 105 | It is not too late to set `reporter.zh=True` by hand before call its `report()` method, of course, if you rely on automatically generated template with `generate_template()`, its `zh` property must be determined more early. 106 | 107 | ## Final report 108 | 109 | The following steps are as usual: 110 | 111 | ```python 112 | reporter.hear(config) 113 | reporter.report(output_file='./reports/3_zh_report.pdf', beamer=True, overwrite=True) 114 | ``` 115 | 116 | The output file [3_zh_report.pdf](https://github.com/li-xin-yi/HK-journalist/blob/master/examples/reports/3_zh_report.pdf) looks like: 117 | 118 | ![](./pic/zh_demo.png) 119 | -------------------------------------------------------------------------------- /slides/main.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: HKJournalist Module 3 | subtitle: A Custom Automatic Report Generator for Python Programs 4 | author: Xinyi Li 5 | date: \today{} 6 | aspectratio: 169 7 | --- 8 | 9 | ## Basic Idea 10 | 11 | **Template** 12 | 13 | - Write a `.md` report with `{var_name}` placeholders instead of real values in some critical places 14 | 15 | **Python Runtime** 16 | 17 | - Maintain a global `dict` variable `config` to fetch mappings in time 18 | 19 | ```{.python} 20 | config = {'var_name': value} 21 | ``` 22 | 23 | - Read `.md` template and fill in real value bound with `var_name` 24 | 25 | ```{.python} 26 | report_template_text = open('template.md','r').read() 27 | Path('raw_report.md').write_text(report_template_text.format(**config)) 28 | ``` 29 | 30 | - Call `pandoc` to convert `md` report to `pdf` slides 31 | 32 | ``` 33 | pandoc -t beamer raw_report.md -o report.pdf 34 | ``` 35 | 36 | ## Wrap Python runtime tasks into a module {.fragile} 37 | 38 | ```{.python} 39 | from hkjournalist import Journalist 40 | 41 | config = dict(...) 42 | 43 | reporter = Journalist(template_file='template.md') 44 | reporter.hear(config) 45 | reporter.report(output_file='output.pdf',beamer=True) 46 | ``` 47 | 48 | ## Display support for special types 49 | 50 | `pandas.DataFrame` 51 | 52 | : $\to$ 3-line table (if numeric, round to `{.2f}`) 53 | 54 | `matplotlib.axes.SubplotBase` 55 | 56 | : $\to$ 57 | 58 | 1. save into a `pdf` standalone file in temp directory 59 | 2. use `![]({var_name})` in template for referring 60 | 3. runtime change as `![](../tmp/xxx.pdf)` 61 | 4. **Note:** before assigning it to `dict`, use 62 | ```{.python} 63 | plt.tight_layout() 64 | ``` 65 | for better performance. 66 | 67 | `function` 68 | 69 | : print its definition 70 | 71 | `list(str)` 72 | 73 | : concatenate into a sentance, following its length (e.g. show features list) 74 | 75 | ## Install 76 | 77 | **Pre-requirements** 78 | 79 | Pandoc 80 | 81 | : https://pandoc.org/installing.html 82 | 83 | pdfLaTeX 84 | 85 | : integrated in [TeXLive](https://www.tug.org/texlive/) (and [MacTeX](http://www.tug.org/mactex/) for MacOS users). 86 | 87 | **Make sure your environment variables set properly.** 88 | 89 | - Install from [PyPI](https://pypi.org/project/hkjournalist/): 90 | ``` 91 | pip install hkjournalist 92 | ``` 93 | **For `Jupyter Notebook` users with Chrome** 94 | 95 | - cannot open `.pdf` on file browser. Download [Firefox](https://www.mozilla.org/en-US/firefox/new/). 96 | 97 | ## Example 98 | \framesubtitle{template.md} 99 | 100 | :::::::::::::: {.columns} 101 | ::: {.column width="50%"} 102 | 103 | ````{.markdown} 104 | % Hello World 105 | % Xinyi Li 106 | % 2019-12-19 107 | 108 | --- 109 | 110 | ### sine plot 111 | 112 | ![]({sin_plot}) 113 | 114 | ### sine table 115 | 116 | {sin_table} 117 | ```` 118 | ::: 119 | 120 | ::: {.column width="50%"} 121 | 122 | ````{.markdown .numberLines startFrom="14"} 123 | 124 | ### sine function 125 | 126 | ```{{.python}} 127 | {sin_func} 128 | ``` 129 | ```` 130 | **Note** 131 | 132 | : use `{{}}` to escape `{}` 133 | ::: 134 | :::::::::::::: 135 | 136 | ## Example {.allowframebreaks} 137 | \framesubtitle{demo.py (leave out headers)} 138 | 139 | ```{.python} 140 | config = {} 141 | def sin_2x_and_cos_2x(x): 142 | y = np.sin(x) * np.sin(x) + np.cos(x) * np.cos(x) 143 | return y 144 | 145 | x = np.arange(0, 4 * np.pi, 0.1) 146 | y1 = np.sin(x) 147 | y2 = np.cos(x) 148 | 149 | df = pd.DataFrame({'x': x, 'sin(x)': y1, 'cos(x)': y2}) 150 | df['sin^2^(x)+cos^2^(x)'] = sin_2x_and_cos_2x(df['x']).values 151 | df = df.set_index('x') 152 | 153 | # plot sine curve as sin_plot 154 | ax = df.plot() 155 | plt.tight_layout() 156 | config['sin_plot'] = ax 157 | 158 | # random select 5 point (x,y) as sin_table 159 | config['sin_table'] = df.sample(5) 160 | # sin_2x_and_cos_2x as sin_func 161 | config['sin_func'] = sin_2x_and_cos_2x 162 | 163 | # HK journalist runs faster than everyone! hear variables and make a big report 164 | reporter = Journalist(template_file='template.md') 165 | reporter.hear(config) 166 | reporter.report(output_file='big_news.pdf', beamer=True, overwrite=True) 167 | ``` 168 | 169 | ## Example 170 | \framesubtitle{big\_news.pdf} 171 | ![](figures/big_news.pdf){ height=100% } 172 | 173 | ## Features 174 | 175 | ### Snapshot 176 | 177 | ```{.python} 178 | Journalist.report(overwrite=False) 179 | ``` 180 | 181 | - it is why use `.pdf` instead of `.html` or raw `.md` 182 | - add a timestamp at the end of output filename, such as `1_prophet_report_2019-12-18_22:06:18.pdf` 183 | 184 | ### Generate Template 185 | 186 | ```{.python} 187 | Journalist.generate_template() 188 | ``` 189 | 190 | - after `hear` method 191 | - generate template with **each** variable on subsection/slide page according its type: 192 | - `var_name` as *title*, `value` as *page content* 193 | - slight modification for usage 194 | 195 | ## References 196 | 197 | GitHub 198 | 199 | : https://github.com/li-xin-yi/HK-journalist 200 | 201 | Documents 202 | 203 | : https://hk-journalist.readthedocs.io/en/latest/ 204 | 205 | Introduction 206 | 207 | : https://zhuanlan.zhihu.com/p/98708920 (Chinese) 208 | 209 | Write Guide 210 | 211 | : https://pandoc.org/MANUAL.html 212 | -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | # Byte-compiled / optimized / DLL files 2 | __pycache__/ 3 | *.py[cod] 4 | *$py.class 5 | 6 | # C extensions 7 | *.so 8 | 9 | # Distribution / packaging 10 | .Python 11 | build/ 12 | develop-eggs/ 13 | dist/ 14 | downloads/ 15 | eggs/ 16 | .eggs/ 17 | lib/ 18 | lib64/ 19 | parts/ 20 | sdist/ 21 | var/ 22 | wheels/ 23 | *.egg-info/ 24 | .installed.cfg 25 | *.egg 26 | MANIFEST 27 | 28 | # PyInstaller 29 | # Usually these files are written by a python script from a template 30 | # before PyInstaller builds the exe, so as to inject date/other infos into it. 31 | *.manifest 32 | *.spec 33 | 34 | # Installer logs 35 | pip-log.txt 36 | pip-delete-this-directory.txt 37 | 38 | # Unit test / coverage reports 39 | htmlcov/ 40 | .tox/ 41 | .nox/ 42 | .coverage 43 | .coverage.* 44 | .cache 45 | nosetests.xml 46 | coverage.xml 47 | *.cover 48 | .hypothesis/ 49 | .pytest_cache/ 50 | 51 | # Translations 52 | *.mo 53 | *.pot 54 | 55 | # Django stuff: 56 | *.log 57 | local_settings.py 58 | db.sqlite3 59 | 60 | # Flask stuff: 61 | instance/ 62 | .webassets-cache 63 | 64 | # Scrapy stuff: 65 | .scrapy 66 | 67 | # Sphinx documentation 68 | docs/_build/ 69 | 70 | # PyBuilder 71 | target/ 72 | 73 | # Jupyter Notebook 74 | .ipynb_checkpoints 75 | 76 | # IPython 77 | profile_default/ 78 | ipython_config.py 79 | 80 | # pyenv 81 | .python-version 82 | 83 | # celery beat schedule file 84 | celerybeat-schedule 85 | 86 | # SageMath parsed files 87 | *.sage.py 88 | 89 | # Environments 90 | .env 91 | .venv 92 | env/ 93 | venv/ 94 | ENV/ 95 | env.bak/ 96 | venv.bak/ 97 | 98 | # Spyder project settings 99 | .spyderproject 100 | .spyproject 101 | 102 | # Rope project settings 103 | .ropeproject 104 | 105 | # mkdocs documentation 106 | /site 107 | 108 | # mypy 109 | .mypy_cache/ 110 | .dmypy.json 111 | dmypy.json 112 | 113 | # Pyre type checker 114 | .pyre/ 115 | 116 | 117 | # Created by https://www.toptal.com/developers/gitignore/api/tex 118 | # Edit at https://www.toptal.com/developers/gitignore?templates=tex 119 | 120 | ### TeX ### 121 | ## Core latex/pdflatex auxiliary files: 122 | *.aux 123 | *.lof 124 | *.log 125 | *.lot 126 | *.fls 127 | *.out 128 | *.toc 129 | *.fmt 130 | *.fot 131 | *.cb 132 | *.cb2 133 | .*.lb 134 | 135 | ## Intermediate documents: 136 | *.dvi 137 | *.xdv 138 | *-converted-to.* 139 | # these rules might exclude image files for figures etc. 140 | # *.ps 141 | # *.eps 142 | # *.pdf 143 | 144 | ## Generated if empty string is given at "Please type another file name for output:" 145 | .pdf 146 | 147 | ## Bibliography auxiliary files (bibtex/biblatex/biber): 148 | *.bbl 149 | *.bcf 150 | *.blg 151 | *-blx.aux 152 | *-blx.bib 153 | *.run.xml 154 | 155 | ## Build tool auxiliary files: 156 | *.fdb_latexmk 157 | *.synctex 158 | *.synctex(busy) 159 | *.synctex.gz 160 | *.synctex.gz(busy) 161 | *.pdfsync 162 | 163 | ## Build tool directories for auxiliary files 164 | # latexrun 165 | latex.out/ 166 | 167 | ## Auxiliary and intermediate files from other packages: 168 | # algorithms 169 | *.alg 170 | *.loa 171 | 172 | # achemso 173 | acs-*.bib 174 | 175 | # amsthm 176 | *.thm 177 | 178 | # beamer 179 | *.nav 180 | *.pre 181 | *.snm 182 | *.vrb 183 | 184 | # changes 185 | *.soc 186 | 187 | # comment 188 | *.cut 189 | 190 | # cprotect 191 | *.cpt 192 | 193 | # elsarticle (documentclass of Elsevier journals) 194 | *.spl 195 | 196 | # endnotes 197 | *.ent 198 | 199 | # fixme 200 | *.lox 201 | 202 | # feynmf/feynmp 203 | *.mf 204 | *.mp 205 | *.t[1-9] 206 | *.t[1-9][0-9] 207 | *.tfm 208 | 209 | #(r)(e)ledmac/(r)(e)ledpar 210 | *.end 211 | *.?end 212 | *.[1-9] 213 | *.[1-9][0-9] 214 | *.[1-9][0-9][0-9] 215 | *.[1-9]R 216 | *.[1-9][0-9]R 217 | *.[1-9][0-9][0-9]R 218 | *.eledsec[1-9] 219 | *.eledsec[1-9]R 220 | *.eledsec[1-9][0-9] 221 | *.eledsec[1-9][0-9]R 222 | *.eledsec[1-9][0-9][0-9] 223 | *.eledsec[1-9][0-9][0-9]R 224 | 225 | # glossaries 226 | *.acn 227 | *.acr 228 | *.glg 229 | *.glo 230 | *.gls 231 | *.*-glg 232 | *.*-glo 233 | *.*-gls 234 | *.glsdefs 235 | *.lzo 236 | *.lzs 237 | 238 | # uncomment this for glossaries-extra (will ignore makeindex's style files!) 239 | # *.ist 240 | 241 | # gnuplottex 242 | *-gnuplottex-* 243 | 244 | # gregoriotex 245 | *.gaux 246 | *.gtex 247 | 248 | # htlatex 249 | *.4ct 250 | *.4tc 251 | *.idv 252 | *.lg 253 | *.trc 254 | *.xref 255 | 256 | # hyperref 257 | *.brf 258 | 259 | # knitr 260 | *-concordance.tex 261 | # TODO Comment the next line if you want to keep your tikz graphics files 262 | *.tikz 263 | *-tikzDictionary 264 | 265 | # listings 266 | *.lol 267 | 268 | # luatexja-ruby 269 | *.ltjruby 270 | 271 | # makeidx 272 | *.idx 273 | *.ilg 274 | *.ind 275 | 276 | # minitoc 277 | *.maf 278 | *.mlf 279 | *.mlt 280 | *.mtc 281 | *.mtc[0-9]* 282 | *.slf[0-9]* 283 | *.slt[0-9]* 284 | *.stc[0-9]* 285 | 286 | # minted 287 | _minted* 288 | *.pyg 289 | 290 | # morewrites 291 | *.mw 292 | 293 | # nomencl 294 | *.nlg 295 | *.nlo 296 | *.nls 297 | 298 | # pax 299 | *.pax 300 | 301 | # pdfpcnotes 302 | *.pdfpc 303 | 304 | # sagetex 305 | *.sagetex.sage 306 | *.sagetex.py 307 | *.sagetex.scmd 308 | 309 | # scrwfile 310 | *.wrt 311 | 312 | # sympy 313 | *.sout 314 | *.sympy 315 | sympy-plots-for-*.tex/ 316 | 317 | # pdfcomment 318 | *.upa 319 | *.upb 320 | 321 | # pythontex 322 | *.pytxcode 323 | pythontex-files-*/ 324 | 325 | # tcolorbox 326 | *.listing 327 | 328 | # thmtools 329 | *.loe 330 | 331 | # TikZ & PGF 332 | *.dpth 333 | *.md5 334 | *.auxlock 335 | 336 | # todonotes 337 | *.tdo 338 | 339 | # vhistory 340 | *.hst 341 | *.ver 342 | 343 | # easy-todo 344 | *.lod 345 | 346 | # xcolor 347 | *.xcp 348 | 349 | # xmpincl 350 | *.xmpi 351 | 352 | # xindy 353 | *.xdy 354 | 355 | # xypic precompiled matrices and outlines 356 | *.xyc 357 | *.xyd 358 | 359 | # endfloat 360 | *.ttt 361 | *.fff 362 | 363 | # Latexian 364 | TSWLatexianTemp* 365 | 366 | ## Editors: 367 | # WinEdt 368 | *.bak 369 | *.sav 370 | 371 | # Texpad 372 | .texpadtmp 373 | 374 | # LyX 375 | *.lyx~ 376 | 377 | # Kile 378 | *.backup 379 | 380 | # gummi 381 | .*.swp 382 | 383 | # KBibTeX 384 | *~[0-9]* 385 | 386 | # TeXnicCenter 387 | *.tps 388 | 389 | # auto folder when using emacs and auctex 390 | ./auto/* 391 | *.el 392 | 393 | # expex forward references with \gathertags 394 | *-tags.tex 395 | 396 | # standalone packages 397 | *.sta 398 | 399 | # Makeindex log files 400 | *.lpz 401 | 402 | # REVTeX puts footnotes in the bibliography by default, unless the nofootinbib 403 | # option is specified. Footnotes are the stored in a file with suffix Notes.bib. 404 | # Uncomment the next line to have this generated file ignored. 405 | #*Notes.bib 406 | 407 | ### TeX Patch ### 408 | # LIPIcs / OASIcs 409 | *.vtc 410 | 411 | # glossaries 412 | *.glstex 413 | 414 | # End of https://www.toptal.com/developers/gitignore/api/tex 415 | 416 | .idea/ 417 | *.DS_Store 418 | */temp/* 419 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | # HK-journalist: Custom Automatic Report Generator for Python program! 2 | 3 | [![Python Versions](https://img.shields.io/pypi/pyversions/hkjournalist.svg)](https://pypi.org/project/hkjournalist) 4 | [![PyPI Version](https://img.shields.io/pypi/v/hkjournalist.svg)](https://pypi.org/project/hkjournalist) 5 | [![License](https://img.shields.io/github/license/li-xin-yi/hk-journalist.svg)](https://github.com/shenweichen/li-xin-yi/blob/master/LICENSE) 6 | [![PyPI - Downloads](https://img.shields.io/pypi/dm/hkjournalist)](https://pypi.org/project/hkjournalist) 7 | [![code size](https://img.shields.io/github/languages/code-size/li-xin-yi/hk-journalist)]() 8 | [![panodc](https://img.shields.io/badge/pandoc-v2.2.3-yellow.svg)](https://pandoc.org/) 9 | [![TeXLive](https://img.shields.io/badge/TeXLive-2018/2019-important.svg)](https://www.tug.org/texlive/) 10 | [![documents status](https://img.shields.io/readthedocs/hk-journalist)](https://hk-journalist.readthedocs.io/) 11 | 12 | 13 | 14 | It is a light and useful Python module, helping you generate a small size, pretty report as PDF slides (or any other format documents which humans can directly read and hand out) each time after your programs finish. All you need to do is to customize a report template using `MarkDown` with variables names used in your Python program and maintain a `dict` to store those variables. Then, A few lines of code added before the end of programs can automatically fetch and display them in the final report file. Also, the codes intended to deal with frequent structures/arguments changes or data source changes can benefit from the package if the report can play a role of 'snapshot' (with timestamp) of each code version. 15 | 16 | - Documentation: https://hk-journalist.readthedocs.io/en/latest/index.html 17 | - Slides for sharing: [slides](./slides/slides.pdf) 18 | 19 | ## Table of Contents 20 | - [Quick Start](#quick-start) 21 | * [Install](#install) 22 | * [Customize your report template](#customize-your-report-template) 23 | * [Run a `Journalist()` in your code to fetch variables](#run-a--journalist----in-your-code-to-fetch-variables) 24 | * [Invite a journalist to make a big news report](#invite-a-journalist-to-make-a-big-news-report) 25 | - [I am too lazy to write a `md` template](#i-am-too-lazy-to-write-an--md--template) 26 | - [Support For zh_CN *(New feature :tada:)*](#support-for-zh_cn) 27 | - [What will my variables on slides look like?](#what-will-my-variables-on-slides-look-like-) 28 | - [More examples and instructions](#more-examples-and-instructions) 29 | - [Tips](#tips) 30 | - [Prerequirements](#prerequirements) 31 | 32 | ## Quick Start 33 | 34 | Before installing `hkjournalist`, please make sure `pandoc` and `pdflatex` are already properly installed in the environment. ([install instruction](#prerequirements)) 35 | 36 | ### Install 37 | 38 | ``` 39 | pip install hkjournalist 40 | ``` 41 | 42 | ### Customize your report template 43 | 44 | Write such an `md` file, use a pair of `{}` to wrap every variable which will be assigned a specified value in your code. save it to `template.md` 45 | 46 | ````md 47 | % Hello World 48 | % Xinyi Li 49 | % 2019-12-19 50 | 51 | --- 52 | 53 | ### sine plot 54 | 55 | ![]({sin_plot}) 56 | 57 | ### sine table 58 | 59 | {sin_table} 60 | 61 | ### sine function 62 | 63 | ```{{.python}} 64 | {sin_func} 65 | ``` 66 | 67 | ```` 68 | 69 | ### Run a `Journalist()` in your code to fetch variables 70 | 71 | First, you should define a `dict` to record mapping with variable names and their value 72 | 73 | ```py 74 | from hkjournalist import Journalist 75 | 76 | config = {} 77 | ``` 78 | 79 | 80 | Then, start your programming, and do not forget to assign value to corresponding variable names in `config`: 81 | ```py 82 | def sin_2x_and_cos_2x(x): 83 | y = np.sin(x) * np.sin(x) + np.cos(x) * np.cos(x) 84 | return y 85 | 86 | x = np.arange(0, 4 * np.pi, 0.1) 87 | y1 = np.sin(x) 88 | y2 = np.cos(x) 89 | 90 | df = pd.DataFrame({'x': x, 'sin(x)': y1, 'cos(x)': y2}) 91 | df['sin^2^(x)+cos^2^(x)'] = sin_2x_and_cos_2x(df['x']).values 92 | df = df.set_index('x') 93 | 94 | # plot sine curve as sin_plot 95 | ax = df.plot() 96 | plt.tight_layout() 97 | config['sin_plot'] = ax 98 | 99 | # random select 5 point (x,y) as sin_table 100 | config['sin_table'] = df.sample(5) 101 | 102 | # sin_2x_and_cos_2x as sin_func 103 | config['sin_func'] = sin_2x_and_cos_2x 104 | ``` 105 | 106 | ### Invite a journalist to make a big news report 107 | 108 | Last but not least, attach 3 lines **critical** code below to have your `Journalist` make a report and save it to `big_news.pdf` (you can get all code above in [demo](./demo) and the output file [big_news.pdf](./demo/big_news.pdf)) 109 | 110 | ```py 111 | # HK journalist runs faster than everyone! hear variable and make a report 112 | reporter = Journalist(template_file='template.md') 113 | reporter.hear(config) 114 | reporter.report(output_file='big_news.pdf', beamer=True, overwrite=True) 115 | ``` 116 | 117 | Report slides display as below: 118 | ![](./demo/big_news.png) 119 | 120 | ## I am too lazy to write an `md` template 121 | 122 | If you have too many variables to report, which make write a template a big project, or simply don't want to write an `md` template, **No problem!** `hkjournalist` can generate a report template with each variable on one slide page automatically. With slight modification or directly using it as a template, you can get your real report. 123 | 124 | **Example** 125 | 126 | ```py 127 | import numpy as np 128 | import matplotlib.pyplot as plt 129 | import seaborn as sns 130 | from hkjournalist import Journalist 131 | 132 | config = {} 133 | 134 | for i in range(1, 4): 135 | uniform_data = np.random.rand(10, 12) 136 | plt.figure(figsize=(10, 8)) 137 | ax = sns.heatmap(uniform_data, cmap='Blues', annot=True, linewidth=.5) 138 | plt.tight_layout() 139 | config[f'Plot_{i}'] = ax 140 | 141 | reporter = Journalist(fig_height='80%') 142 | reporter.hear(config) 143 | reporter.generate_template('auto_generate_template.md') 144 | reporter.report(output_file='auto_report.pdf', beamer=True, overwrite=True) 145 | ``` 146 | Output ([raw file](./demo/auto_report.pdf) ): 147 | 148 | ![](./demo/auto_report.png) 149 | 150 | ## Support For zh_CN 151 | 152 | Yes, now, from version 0.0.5, it can use template contains chinese characters :tada:. 153 | 154 | Just pass argument `zh=True` when creating a Journalist(), or set its `zh` property at any time before generating reports. 155 | 156 | ```py 157 | reporter = Journalist(template_file='./reports/template.md', zh=True) 158 | ``` 159 | 160 | If you want to use your customized template with chinese characters, don't forget to add one line at first of the YAML metadata block in your `Markdown` template: 161 | 162 | ```markdown 163 | --- 164 | documentclass: ctexbeamer 165 | ... 166 | --- 167 | ``` 168 | 169 | Here is a [simple example](./examples/3_zh_CN_support.py) similar to [Quick start](#quick-start), Except for [its template](./examples/reports/3_zh_cn_template.md) containing chinese characters. A perfect chinese [slides](./examples/reports/3_zh_report.pdf) file can be generated by the program as: 170 | 171 | ![](./demo/zh_demo.png) 172 | 173 | **Note**: make sure `xelatex` is installed properly. 174 | 175 | More details can be found in [API Documentation](https://hk-journalist.readthedocs.io/en/latest/source/hkjournalist.html) and [this tutorial](https://hk-journalist.readthedocs.io/en/latest/source/tutorial_3.html). 176 | 177 | ## What will my variables on slides look like? 178 | 179 | All variables pass to `Journalist` via `hear` will display as strings just like what their `__str__` method does. 180 | 181 | Except for 4 types with special support: 182 | 183 | - `pandas.DataFrame`: -> a 3-line table (`TeX` default style) 184 | - `matplotlib.axes.SubplotBase` (known as base figure object `ax` in `matplotlib`): -> a figure print on report (with high quality and small size as `pdf`) 185 | - `function`: -> its full definition 186 | - `list(str)`: -> `len(list)` followed by a sentance with all words concatenated. 187 | 188 | Besides, `list(str)` and `pandas.DataFrame` may be too long to display, which are allowed to span multiple pages in final slides. 189 | 190 | ## More examples and instructions 191 | 192 | - [Documentation(https://hk-journalist.readthedocs.io/) 193 | - More complex usages available in [examples](./examples) 194 | - How to write a sophisticated slides template using `md`？ See [pandoc tutorials](https://pandoc.org/MANUAL.html#producing-slide-shows-with-pandoc) 195 | 196 | ## Tips 197 | 198 | - Before pass `plt.Axes` object (figure object used in `matplotlib`) to `dict`, use `plt.tight_layout()`statement to adjust its size. 199 | - Use double curly braces `{{}}` to escape `{}` in the template. 200 | - Turn off parameter `overwrite` in `Journalist.report()`, you will get a file name with a timestamp in it. All these reports generated by such a method serve as snapshots. 201 | - To produce plain PDF article document instead of beamer slides, turn off `beamer` in `report()`. 202 | 203 | ## Prerequirements 204 | 205 | - `pandoc`: https://pandoc.org/installing.html 206 | - `texlive`/`mactex`(for MacOS): https://www.tug.org/texlive/ http://www.tug.org/mactex/ 207 | 208 | And if you use some IDEs like PyCharm, you need to add their path (use `which tex` and `which pandoc` in bash environment to find them) to environment variables `$PATH` in IDE run options. (e.g. in Pycharm,`run`-> `edit configuration` -> `environment variables`) 209 | 210 | For [Jupyter Notebook](https://jupyter.org/) users, the final output file may not be opened on Chrome (see [this question](https://stackoverflow.com/questions/55251691/how-to-open-pdf-file-in-jupyter-file-browser)). So, for convenience, you can download [Firefox](https://www.mozilla.org/en-US/firefox/new/) to write notebooks and view pdf reports right after generating. 211 | -------------------------------------------------------------------------------- /hkjournalist/journalist.py: -------------------------------------------------------------------------------- 1 | import pandas as pd 2 | import os 3 | import matplotlib 4 | import inspect 5 | import matplotlib.pyplot as plt 6 | import subprocess 7 | import datetime 8 | import collections 9 | from tabulate import tabulate 10 | from pathlib import Path 11 | from shutil import rmtree 12 | import pkg_resources 13 | 14 | resource_package = __name__ 15 | code_config_path = '/'.join(('configuration', 'code_block.tex')) 16 | tex_config_path = pkg_resources.resource_filename( 17 | resource_package, code_config_path) 18 | 19 | try: 20 | collectionsAbc = collections.abc 21 | except AttributeError: 22 | collectionsAbc = collections 23 | 24 | 25 | class Journalist(): 26 | """ 27 | Class to record and generate reports 28 | """ 29 | 30 | def __init__(self, template_file=None, fig_width=None, fig_height=None, tmp_path='./temp', zh=False): 31 | """ 32 | :param template_file: file path of md template 33 | :type template_file: str 34 | :param fig_width: figure width (percentage of whole page width), prior to `fig_height` settings 35 | :type fig_width: None, int 36 | :param fig_height: figure height (percentage of whole page width)` 37 | :type fig_height: None, int 38 | :param tmp_path: temporary directory path to store temporary files (such as figures) 39 | :type tmp_path: str 40 | :param zh: if it supports chinese (zh_CN) usage 41 | :type zh: bool 42 | """ 43 | self.template_file = template_file 44 | self._width = fig_width 45 | self._height = fig_height 46 | self.var_type = {} 47 | self.fig_counters = 0 48 | self.tmp_path = tmp_path 49 | self.report_config = {} 50 | self.zh = zh 51 | if not os.path.exists(tmp_path): 52 | os.mkdir(tmp_path) 53 | if fig_width: 54 | self.fig_config = '{{ ' + f'width={fig_width}%' + ' }}' 55 | elif fig_height: 56 | self.fig_config = '{{ ' + f'height={fig_height}%' + ' }}' 57 | else: 58 | self.fig_config = '' 59 | 60 | def __preprocess(self, config_dict: dict): 61 | """ 62 | :param config_dict: 63 | :type config_dict: dict 64 | :return: config dict after pre-processing 65 | :rtype: dict 66 | """ 67 | applied_config_dict = config_dict.copy() 68 | for k, report_content in config_dict.items(): 69 | if isinstance(report_content, pd.DataFrame): 70 | # transform into a string with markdown table format, 71 | applied_config_dict[k] = tabulate( 72 | report_content.round(2), tablefmt='github', headers='keys') 73 | self.var_type[k] = 'table' 74 | 75 | elif isinstance(report_content, matplotlib.axes.SubplotBase): 76 | # save plot generated by matplotlib to a pdf format in temp directory 77 | fig_file = os.path.join( 78 | self.tmp_path, f'figure_{self.fig_counters}.pdf') 79 | self.fig_counters += 1 80 | ax = report_content.get_figure() 81 | ax.savefig(fig_file) 82 | applied_config_dict[k] = fig_file 83 | self.var_type[k] = 'figure' 84 | 85 | elif callable(report_content): 86 | # print function definition on final report 87 | applied_config_dict[k] = inspect.getsource(report_content) 88 | self.var_type[k] = 'function' 89 | 90 | elif isinstance(report_content, list) and all(isinstance(s, str) for s in report_content): 91 | # concatenate all words into a sentence 92 | applied_config_dict[k] = str( 93 | len(report_content)) + ' ' + ', '.join(report_content) 94 | self.var_type[k] = 'list(str)' 95 | 96 | elif isinstance(report_content, collectionsAbc.Iterable) and all( 97 | isinstance(s, matplotlib.axes.SubplotBase) for s in report_content): 98 | # plot last ax 99 | fig_file = os.path.join( 100 | self.tmp_path, f'figure_{self.fig_counters}.pdf') 101 | self.fig_counters += 1 102 | ax = report_content[-1].get_figure() 103 | ax.savefig(fig_file) 104 | applied_config_dict[k] = fig_file 105 | self.var_type[k] = 'figure' 106 | 107 | elif isinstance(report_content, pd.Series): 108 | applied_config_dict[k] = str( 109 | report_content).replace('\n', '\n\n') 110 | self.var_type[k] = 'series' 111 | 112 | else: 113 | # otherwise: leave it as origin format (use its own str method) 114 | applied_config_dict[k] = report_content 115 | self.var_type[k] = 'other' 116 | 117 | return applied_config_dict 118 | 119 | def hear(self, config_dict: dict): 120 | """ 121 | Pass your variables mappings to the reporter 122 | 123 | :param config_dict: variable mappings such as {'var_name':value} 124 | :type config_dict: dict 125 | :return: None 126 | :rtype: None 127 | """ 128 | newest_config = self.__preprocess(config_dict) 129 | self.report_config.update(newest_config) 130 | 131 | def generate_template(self, template_file='./template.md', title='template', author='Author', append=False): 132 | """Generate a `md` template according to mappings which previously passed to. 133 | 134 | The output template will be structed as each variable on a single slide with variable name as its title 135 | 136 | **Note**：it may overwrite the file with the address 137 | 138 | :param template_file: output template file path 139 | :type template_file: str 140 | :return: None 141 | :rtype: None 142 | :param title: report title 143 | :type title: str 144 | :param author: author name 145 | :type author: str 146 | :param append: If use append mode to add new contents of report 147 | :type append: bool 148 | :return: 149 | """ 150 | if self.template_file and not append: 151 | print('warning: template file was specified before and will be overwritten') 152 | 153 | self.template_file = template_file 154 | if append: 155 | report_text = open(self.template_file).read() + '\n' 156 | else: 157 | report_text = '---\n' 158 | if self.zh: 159 | report_text += 'documentclass: ctexbeamer\n' 160 | report_text += f'title: {title}\n' 161 | report_text += f'author: {author}\n' 162 | report_text += 'date: \\today{{}}\n' 163 | report_text += '---\n' 164 | 165 | for k, v in self.var_type.items(): 166 | k_name = '{' + k + '}' 167 | title = f"### {k}\n\n" 168 | if v == 'figure': 169 | content = f'![]({k_name}){self.fig_config}\n\n' 170 | elif v == 'function': 171 | title = f"### {k}" + '{{.fragile}}\n\n' 172 | content = '```{{.python}}\n' + k_name + '\n```\n\n' 173 | else: 174 | # In case the content is too long, allow multiple frames to display 175 | if v == 'list(str)' or v == 'table' or v == 'series': 176 | title = f"### {k}" + '{{.allowframebreaks}}\n\n' 177 | content = k_name + '\n\n' 178 | report_text = report_text + title + content 179 | 180 | Path(template_file).write_text(report_text) 181 | print(f'New template file is generated in {template_file}') 182 | 183 | def report(self, output_file='./final_report.pdf', beamer=True, theme='default', color_theme='seagull', 184 | use_template_config=False, overwrite=True, aspectratio=43,): 185 | """ 186 | Generate final pdf (or other format) report using previously heard config dict 187 | 188 | :param output_file: final output file path 189 | :type output_file: str 190 | :param beamer: whether the output pdf will be a beamer slides ? 191 | :type beamer: bool 192 | :param theme: the theme used to create beamer (see https://hartwork.org/beamer-theme-matrix/)) 193 | :type theme: str 194 | :param color_theme: the color theme used to create beamer (see https://hartwork.org/beamer-theme-matrix/) 195 | :type color_theme: str 196 | :param use_template_config: whether use metadata params of format in your custom template, if false, just use params in this function to produce a report. otherwise, please ref to https://pandoc.org/MANUAL.html to write a fine ``md`` template 197 | :type use_template_config: bool 198 | :param overwrite: whether use a timestamp of current time as a postfix for the final output filename. if false, a new file will occur every time the method call without overwriting previouly ones. 199 | :type overwrite: bool 200 | :param aspectratio: aspect ratio of slide page. only valid when `beamer` is turn on and output format is `pdf` 201 | :type aspectratio: int 202 | :return: execution return code (0 if succeed) 203 | :rtype: int 204 | """ 205 | raw_file = os.path.join(self.tmp_path, 'raw_report.md') 206 | output_file = output_file.replace(' ', '-') 207 | report_name, ext = os.path.splitext(output_file) 208 | args_list = ['pandoc', '-s', raw_file, 209 | '--listings', '-H', tex_config_path] 210 | 211 | if overwrite: 212 | final_file = output_file 213 | else: 214 | timestamp = datetime.datetime.now().strftime("%Y-%m-%d_%H:%M:%S") 215 | final_file = f"{report_name}_{timestamp}{ext}" 216 | 217 | report_template_text = open( 218 | self.template_file, 'r', encoding='utf8').read() 219 | Path(raw_file).write_text(report_template_text.format( 220 | **self.report_config), encoding='utf8') 221 | 222 | if beamer and ext == '.pdf': 223 | args_list += ['-t', 'beamer'] 224 | else: 225 | args_list += ['-t', 'latex'] 226 | 227 | if beamer and not use_template_config: 228 | args_list += ['-V', 'theme:' + theme, '-V', 'colortheme:' + color_theme, '-V', 229 | 'aspectratio:' + str(aspectratio)] 230 | 231 | if self.zh: 232 | args_list.append('--pdf-engine=xelatex') 233 | 234 | args_list += ['-o', final_file] 235 | 236 | # command = f'pandoc {beamer_command} {raw_file} {tex_command} {args_list} -s -o {final_file}' 237 | 238 | # shell=True sometimes leads to invalid output 239 | proc = subprocess.run(args_list, shell=False, capture_output=True) 240 | 241 | if proc.returncode == 0: 242 | print(f'Make a big news! The newest report is now in {final_file}') 243 | else: 244 | # for debug 245 | print(f'Report failed with code {proc.returncode} \n', f'stderr: {proc.stderr.decode("utf8")} \n ', 246 | f'stdout: {proc.stdout.decode("utf8")}') 247 | 248 | if os.path.exists(self.tmp_path): 249 | rmtree(self.tmp_path) 250 | return proc.returncode 251 | -------------------------------------------------------------------------------- /examples/data/example_wp_log_peyton_manning.csv: -------------------------------------------------------------------------------- 1 | "ds","y" 2 | "2007-12-10",9.59076113897809 3 | "2007-12-11",8.51959031601596 4 | "2007-12-12",8.18367658262066 5 | "2007-12-13",8.07246736935477 6 | "2007-12-14",7.8935720735049 7 | "2007-12-15",7.78364059622125 8 | "2007-12-16",8.41405243249672 9 | "2007-12-17",8.82922635473185 10 | "2007-12-18",8.38251828808963 11 | "2007-12-19",8.06965530688617 12 | "2007-12-20",7.87929148508227 13 | "2007-12-21",7.76174498465891 14 | 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