├── README.md ├── Soft.pm ├── adjust_flnc_bam.pl ├── adjust_phased_bam.pl ├── other ├── alternative_splice.py ├── analysis_cluster.pl ├── bed2cDNA_match.pl ├── list └── polyA_position.pl ├── phase_allotetraploid_pipeline.pl ├── prepare_bam_for_phase.pl └── program.config.txt /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/liangfan01/pipeline-for-isoseq/HEAD/README.md -------------------------------------------------------------------------------- /Soft.pm: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/liangfan01/pipeline-for-isoseq/HEAD/Soft.pm -------------------------------------------------------------------------------- /adjust_flnc_bam.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/liangfan01/pipeline-for-isoseq/HEAD/adjust_flnc_bam.pl -------------------------------------------------------------------------------- /adjust_phased_bam.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/liangfan01/pipeline-for-isoseq/HEAD/adjust_phased_bam.pl -------------------------------------------------------------------------------- /other/alternative_splice.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/liangfan01/pipeline-for-isoseq/HEAD/other/alternative_splice.py -------------------------------------------------------------------------------- /other/analysis_cluster.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/liangfan01/pipeline-for-isoseq/HEAD/other/analysis_cluster.pl -------------------------------------------------------------------------------- /other/bed2cDNA_match.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/liangfan01/pipeline-for-isoseq/HEAD/other/bed2cDNA_match.pl -------------------------------------------------------------------------------- /other/list: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/liangfan01/pipeline-for-isoseq/HEAD/other/list -------------------------------------------------------------------------------- /other/polyA_position.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/liangfan01/pipeline-for-isoseq/HEAD/other/polyA_position.pl -------------------------------------------------------------------------------- /phase_allotetraploid_pipeline.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/liangfan01/pipeline-for-isoseq/HEAD/phase_allotetraploid_pipeline.pl -------------------------------------------------------------------------------- /prepare_bam_for_phase.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/liangfan01/pipeline-for-isoseq/HEAD/prepare_bam_for_phase.pl -------------------------------------------------------------------------------- /program.config.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/liangfan01/pipeline-for-isoseq/HEAD/program.config.txt --------------------------------------------------------------------------------