├── README.md ├── data ├── Malawiantwin_pairs │ ├── X_eval.npy │ ├── X_test.npy │ ├── X_train.npy │ ├── Y_eval.npy │ ├── Y_train.npy │ └── c.npy └── USA │ ├── X_eval.npy │ ├── X_test.npy │ ├── X_train.npy │ ├── Y_eval.npy │ ├── Y_train.npy │ └── c.npy ├── docs └── Architecture.jpg ├── model ├── checkpoint ├── model_binary.ckpt.data-00000-of-00001 ├── model_binary.ckpt.index ├── model_binary.ckpt.meta ├── model_continous.ckpt.data-00000-of-00001 ├── model_continous.ckpt.index └── model_continous.ckpt.meta ├── requirements.txt ├── result ├── Malawiantwin_pairs │ ├── result.jpg │ └── y_prediction.txt └── USA │ ├── result.jpg │ └── y_prediction.txt └── src ├── HAC.py ├── MDeep.py ├── __pycache__ ├── HAC.cpython-36.pyc ├── binary.cpython-36.pyc ├── continous.cpython-36.pyc └── model.cpython-36.pyc ├── binary.py ├── continous.py └── model.py /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/README.md -------------------------------------------------------------------------------- /data/Malawiantwin_pairs/X_eval.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/data/Malawiantwin_pairs/X_eval.npy -------------------------------------------------------------------------------- /data/Malawiantwin_pairs/X_test.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/data/Malawiantwin_pairs/X_test.npy -------------------------------------------------------------------------------- /data/Malawiantwin_pairs/X_train.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/data/Malawiantwin_pairs/X_train.npy -------------------------------------------------------------------------------- /data/Malawiantwin_pairs/Y_eval.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/data/Malawiantwin_pairs/Y_eval.npy -------------------------------------------------------------------------------- /data/Malawiantwin_pairs/Y_train.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/data/Malawiantwin_pairs/Y_train.npy -------------------------------------------------------------------------------- /data/Malawiantwin_pairs/c.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/data/Malawiantwin_pairs/c.npy -------------------------------------------------------------------------------- /data/USA/X_eval.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/data/USA/X_eval.npy -------------------------------------------------------------------------------- /data/USA/X_test.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/data/USA/X_test.npy -------------------------------------------------------------------------------- /data/USA/X_train.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/data/USA/X_train.npy -------------------------------------------------------------------------------- /data/USA/Y_eval.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/data/USA/Y_eval.npy -------------------------------------------------------------------------------- /data/USA/Y_train.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/data/USA/Y_train.npy -------------------------------------------------------------------------------- /data/USA/c.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/data/USA/c.npy -------------------------------------------------------------------------------- /docs/Architecture.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/docs/Architecture.jpg -------------------------------------------------------------------------------- /model/checkpoint: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/model/checkpoint -------------------------------------------------------------------------------- /model/model_binary.ckpt.data-00000-of-00001: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/model/model_binary.ckpt.data-00000-of-00001 -------------------------------------------------------------------------------- /model/model_binary.ckpt.index: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/model/model_binary.ckpt.index -------------------------------------------------------------------------------- /model/model_binary.ckpt.meta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/model/model_binary.ckpt.meta -------------------------------------------------------------------------------- /model/model_continous.ckpt.data-00000-of-00001: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/model/model_continous.ckpt.data-00000-of-00001 -------------------------------------------------------------------------------- /model/model_continous.ckpt.index: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/model/model_continous.ckpt.index -------------------------------------------------------------------------------- /model/model_continous.ckpt.meta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/model/model_continous.ckpt.meta -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/requirements.txt -------------------------------------------------------------------------------- /result/Malawiantwin_pairs/result.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/result/Malawiantwin_pairs/result.jpg -------------------------------------------------------------------------------- /result/Malawiantwin_pairs/y_prediction.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/result/Malawiantwin_pairs/y_prediction.txt -------------------------------------------------------------------------------- /result/USA/result.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/result/USA/result.jpg -------------------------------------------------------------------------------- /result/USA/y_prediction.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/result/USA/y_prediction.txt -------------------------------------------------------------------------------- /src/HAC.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/src/HAC.py -------------------------------------------------------------------------------- /src/MDeep.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/src/MDeep.py -------------------------------------------------------------------------------- /src/__pycache__/HAC.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/src/__pycache__/HAC.cpython-36.pyc -------------------------------------------------------------------------------- /src/__pycache__/binary.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/src/__pycache__/binary.cpython-36.pyc -------------------------------------------------------------------------------- /src/__pycache__/continous.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/src/__pycache__/continous.cpython-36.pyc -------------------------------------------------------------------------------- /src/__pycache__/model.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/src/__pycache__/model.cpython-36.pyc -------------------------------------------------------------------------------- /src/binary.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/src/binary.py -------------------------------------------------------------------------------- /src/continous.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/src/continous.py -------------------------------------------------------------------------------- /src/model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lichen-lab/MDeep/HEAD/src/model.py --------------------------------------------------------------------------------