├── 01. Cellranger_pipeline └── 01. Cellranger_pipeline.sh ├── 02. Data_processing └── 02. Data_processing.R ├── 03. DEG_definition └── 03. DEG_definition.R ├── 04. AASB-DEG_definition ├── 04. AASB-DEG_definition.R ├── Input │ ├── DEG_filter.csv │ └── File_introduction └── Output │ ├── AASB_DEG.csv │ ├── AASB_count.csv │ ├── AASB_tissue.csv │ └── File_introduction ├── 05. Pathway_enrichment ├── 05. Pathway_enrichment.R ├── Input │ ├── DEG_filter.csv │ └── File_introduction └── Output │ ├── DEG_FDVSFS_down_go_data.csv │ ├── DEG_FDVSFS_up_go_data.csv │ ├── DEG_MCVSMS_down_go_data.csv │ ├── DEG_MCVSMS_up_go_data.csv │ ├── DEG_MSVSFS_down_go_data.csv │ ├── DEG_MSVSFS_up_go_data.csv │ ├── File_introdcution │ ├── Pathway_AASB_DEG_data.csv │ └── Pathway_DEG_data.csv ├── LICENSE └── README.md /01. Cellranger_pipeline/01. 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