├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── PlotAppForTBtools.Rproj ├── R └── TBploter.R ├── README.md ├── inst └── TBploter │ ├── data │ ├── TBtools.KEGG.enrichment.result.xls │ └── TBtools.level2.counts.table.xls │ ├── extraWedget.R │ ├── server.R │ ├── ui.R │ └── www │ ├── image │ ├── GOanalysis.png │ ├── KEGGanalysis.png │ ├── screenshot.png │ └── workflow.png │ └── main.css └── man └── TBploter.Rd /.Rbuildignore: -------------------------------------------------------------------------------- 1 | ^.*\.Rproj$ 2 | ^\.Rproj\.user$ 3 | -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | .Rproj.user 2 | .Rhistory 3 | .RData 4 | .Ruserdata 5 | -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- 1 | Package: TBploter 2 | Type: Package 3 | Title: Plot server for TBtools Output 4 | Version: 1.0.1 5 | Date: 2016-08-13 6 | Author: Qi Zhao 7 | Maintainer: Qi Zhao 8 | Imports: 9 | shiny (>= 0.13.2), 10 | shinyBS (>= 0.61), 11 | ggplot2 (>= 1.0.1), 12 | shinydashboard (>= 0.5.1), 13 | ggthemes (>= 3.0.3) 14 | URL: https://github.com/likelet/PlotAppForTBtools 15 | Description: Plot server for TBtools Output 16 | License: GNU -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | The MIT License (MIT) 2 | 3 | Copyright © 2016 Qi Zhao 4 | 5 | Permission is hereby granted, free of charge, to any person obtaining a copy 6 | of this software and associated documentation files (the "Software"), to deal 7 | in the Software without restriction, including without limitation the rights 8 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 9 | copies of the Software, and to permit persons to whom the Software is 10 | furnished to do so, subject to the following conditions: 11 | 12 | The above copyright notice and this permission notice shall be included in 13 | all copies or substantial portions of the Software. 14 | 15 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 16 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 17 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 18 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 19 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 20 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN 21 | THE SOFTWARE. -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- 1 | exportPattern("^[[:alpha:]]+") 2 | -------------------------------------------------------------------------------- /PlotAppForTBtools.Rproj: -------------------------------------------------------------------------------- 1 | Version: 1.0 2 | 3 | RestoreWorkspace: Default 4 | SaveWorkspace: Default 5 | AlwaysSaveHistory: Default 6 | 7 | EnableCodeIndexing: Yes 8 | UseSpacesForTab: Yes 9 | NumSpacesForTab: 2 10 | Encoding: UTF-8 11 | 12 | RnwWeave: Sweave 13 | LaTeX: pdfLaTeX 14 | 15 | BuildType: Package 16 | PackageUseDevtools: Yes 17 | PackageInstallArgs: --no-multiarch --with-keep.source 18 | -------------------------------------------------------------------------------- /R/TBploter.R: -------------------------------------------------------------------------------- 1 | #' Run the default TBploter app for analysis locally 2 | #' 3 | #' \code{TBploter} run TBploter locally 4 | #' @author Qi Zhao 5 | 6 | TBploter <- function() { 7 | shiny::runApp(system.file("TBploter", package = "TBploter")) 8 | } 9 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | # PlotAppForTBtools V1.0.1 2 | [TBtools](https://github.com/CJ-Chen/TBtools/releases) is a Toolset written by CJ-Chen for wet-lab biologists.It aims at facilitating some common and elaborate but simple molecular analysis tasks such as sequences extract, gene set functional enrichment It is easy to use and can run in all Operating system including Mac, Linux, Windows, which has Java run time environment higher than 1.6 . However, TBtools may mainly focus on data analysis procedure which make it difficult to plot fancy figures as well as being publishable. To cover the shortage, we implement an interactive plot websever using shiny programing env, and named TBploter 3 | 4 | [Click here to redirect to TRploter website.](http://202.116.161.95:3839/sample-apps/PlotAppForTBtools/inst/TBploter/)
5 | **Screen shoot of TBploter** 6 | 7 | 8 | ### Function gallary 9 | **GOenriment ploter** 10 | 11 | **KEGGenrichment ploter** 12 | 13 | 14 | ### Install dependencies 15 | To check the dependencies installed correctly, this command can help users to check the status of each installation
16 | ```R 17 | library("Packages for check") 18 | ``` 19 | Code for install dependencies R packages 20 | ```R 21 | cDep <- c("ggplot2","shiny","shinyBS","shinydashboard","ggthemes","DT") 22 | 23 | ###INSTALLED PACKAGES 24 | #get installed list 25 | inst <- packageStatus()$inst 26 | 27 | #check and install DEPENDENCIES from CRAN 28 | for(i in 1:length(cDep)){ 29 | tag = which(inst$Package == cDep[i]) 30 | if(length(tag)){ 31 | remove.packages(cDep[i]) 32 | } 33 | install.packages(cDep[i]) 34 | } 35 | 36 | ``` 37 | ### Install TBploter 38 | To install the latest development build directly from GitHub, run this: 39 | 40 | ```R 41 | if (!require("devtools")) 42 | install.packages("devtools") 43 | devtools::install_github("likelet/PlotAppForTBtools") 44 | ``` 45 | ### Update Information 46 | ####2016-8-15 47 | add tiff plot function 48 | 49 | ### Designers: 50 | Qi Zhao, zhaoqi3@mail2.sysu.edu.cn
51 | 52 | ### Developers: 53 | Qi Zhao, zhaoqi3@mail2.sysu.edu.cn
54 | Chenjie Chen,120509419@qq.com 55 | 56 | ### Maintainer: 57 | Qi Zhao 58 | Please feel free contact us.
59 | 60 | ### Copyright 61 | MIT license 62 | 63 | ### Citation 64 | during preparation 65 | -------------------------------------------------------------------------------- /inst/TBploter/data/TBtools.KEGG.enrichment.result.xls: -------------------------------------------------------------------------------- 1 | Term Name GeneHitsInSelectedSet AllGenesInSelectedSet GeneHitsInBackground AllGenesInBackground p-value enrichFactor GeneListInSelectedSets corrected p-value(BH method) 2 | Biosynthesis of other secondary metabolites 117 1139 774 15915 4.3298697960381105E-15 2.1121648937256263 [Unigene_19446, Unigene_44647, Unigene_29247, Unigene_32389, Unigene_32388, Unigene_40677, Unigene_970, Unigene_33194, Unigene_27972, Unigene_26762, Unigene_10735, Unigene_29871, Unigene_34973, Unigene_15877, Unigene_15875, Unigene_15876, Unigene_44648, Unigene_37166, Unigene_15874, Unigene_22716, Unigene_18495, Unigene_1177, Unigene_3116, Unigene_2301, Unigene_1611, Unigene_6461, Unigene_26158, Unigene_11736, Unigene_45154, Unigene_11737, Unigene_2384, Unigene_14609, Unigene_30982, Unigene_16117, Unigene_14178, Unigene_16078, Unigene_11181, Unigene_11182, Unigene_10373, Unigene_16077, Unigene_21257, Unigene_21255, Unigene_23795, Unigene_1101, Unigene_21258, Unigene_21259, Unigene_24129, Unigene_3082, Unigene_31955, Unigene_42578, Unigene_41004, Unigene_45561, Unigene_417, Unigene_45563, Unigene_40944, Unigene_18769, Unigene_14683, Unigene_22859, Unigene_17831, Unigene_19054, Unigene_33584, Unigene_38872, Unigene_9314, Unigene_1030, Unigene_811, Unigene_34245, Unigene_14115, Unigene_16414, Unigene_19081, Unigene_17982, Unigene_32581, Unigene_24940, Unigene_5642, Unigene_34090, Unigene_30722, Unigene_44297, Unigene_37009, Unigene_35588, Unigene_242, Unigene_15796, Unigene_44725, Unigene_24939, Unigene_18543, Unigene_2926, Unigene_5917, Unigene_33440, Unigene_2928, Unigene_36277, Unigene_23127, Unigene_2589, Unigene_25267, Unigene_48462, Unigene_9258, Unigene_45594, Unigene_43057, Unigene_43056, Unigene_10177, Unigene_12113, Unigene_10574, Unigene_10575, Unigene_14895, Unigene_9928, Unigene_23597, Unigene_45129, Unigene_1268, Unigene_20521, Unigene_26068, Unigene_36929, Unigene_2590, Unigene_45123, Unigene_12228, Unigene_33027, Unigene_860, Unigene_12343, Unigene_13030, Unigene_19373, Unigene_10043] 6.408207298136404E-13 3 | 00940 Phenylpropanoid biosynthesis 61 1139 334 15915 8.485989688722384E-12 2.5519154842203213 [Unigene_19446, Unigene_44647, Unigene_29247, Unigene_9314, Unigene_1030, Unigene_811, Unigene_14115, Unigene_40677, Unigene_16414, Unigene_33194, Unigene_32581, Unigene_30722, Unigene_10735, Unigene_44297, Unigene_15877, Unigene_15875, Unigene_15876, Unigene_242, Unigene_44648, Unigene_15874, Unigene_2928, Unigene_3116, Unigene_2301, Unigene_2589, Unigene_1611, Unigene_6461, Unigene_26158, Unigene_25267, Unigene_9258, Unigene_45154, Unigene_2384, Unigene_14609, Unigene_10177, Unigene_10574, Unigene_10575, Unigene_16117, Unigene_16078, Unigene_16077, Unigene_21257, Unigene_21255, Unigene_23795, Unigene_45129, Unigene_20521, Unigene_21258, Unigene_21259, Unigene_3082, Unigene_26068, Unigene_36929, Unigene_31955, Unigene_2590, Unigene_45561, Unigene_417, Unigene_45123, Unigene_45563, Unigene_40944, Unigene_860, Unigene_14683, Unigene_12343, Unigene_19054, Unigene_19373, Unigene_33584] 6.279632369654564E-10 4 | 00592 alpha-Linolenic acid metabolism 32 1139 127 15915 2.154669775933371E-10 3.5207012644051625 [Unigene_3015, Unigene_8667, Unigene_2146, Unigene_29803, Unigene_2005, Unigene_1159, Unigene_1655, Unigene_1190, Unigene_28232, Unigene_28231, Unigene_28230, Unigene_14338, Unigene_16895, Unigene_2891, Unigene_1164, Unigene_6433, Unigene_2453, Unigene_13072, Unigene_6434, Unigene_3102, Unigene_2454, Unigene_28229, Unigene_30428, Unigene_6432, Unigene_28266, Unigene_32609, Unigene_14923, Unigene_12986, Unigene_15477, Unigene_1934, Unigene_1935, Unigene_16585] 1.0629704227937964E-8 5 | Metabolism 583 1139 6852 15915 6.2172952342010035E-9 1.1888693188020956 [Unigene_14390, Unigene_8306, Unigene_7698, Unigene_8667, Unigene_37393, Unigene_8307, Unigene_30757, Unigene_25162, Unigene_41406, Unigene_40677, Unigene_1901, Unigene_294, Unigene_38126, Unigene_12080, Unigene_7349, Unigene_43844, Unigene_43843, Unigene_43721, Unigene_33915, Unigene_27330, Unigene_7342, Unigene_29871, Unigene_42508, Unigene_41658, Unigene_15477, Unigene_37166, Unigene_18623, Unigene_44803, Unigene_13179, Unigene_39584, Unigene_44808, Unigene_15350, Unigene_14384, Unigene_18890, Unigene_6346, Unigene_19987, Unigene_9979, Unigene_6461, Unigene_26158, Unigene_29665, Unigene_3194, Unigene_3073, Unigene_48264, Unigene_9731, Unigene_46089, Unigene_3198, Unigene_30982, Unigene_39317, Unigene_16117, Unigene_278, Unigene_157, Unigene_18415, Unigene_275, Unigene_14178, Unigene_16237, Unigene_18413, Unigene_20724, Unigene_16114, Unigene_20966, Unigene_17562, Unigene_20728, Unigene_5147, Unigene_13072, Unigene_29419, Unigene_3082, Unigene_28445, Unigene_31955, Unigene_8770, Unigene_9500, Unigene_48277, Unigene_18769, Unigene_18889, Unigene_41877, Unigene_16585, Unigene_7137, Unigene_42700, Unigene_25001, Unigene_47272, Unigene_5075, Unigene_9314, Unigene_25000, Unigene_40758, Unigene_14115, Unigene_16414, Unigene_16895, Unigene_17982, Unigene_14594, Unigene_37, Unigene_35, Unigene_34090, Unigene_30722, Unigene_32900, Unigene_24381, Unigene_8475, Unigene_9322, Unigene_37009, Unigene_16769, Unigene_15796, Unigene_14464, Unigene_13374, Unigene_39545, Unigene_2926, Unigene_2927, Unigene_1717, Unigene_2928, Unigene_36277, Unigene_6389, Unigene_47139, Unigene_47253, Unigene_28535, Unigene_25267, Unigene_29743, Unigene_48462, Unigene_47252, Unigene_27200, Unigene_38428, Unigene_40611, Unigene_37219, Unigene_20802, Unigene_14497, Unigene_12199, Unigene_196, Unigene_36360, Unigene_49563, Unigene_47140, Unigene_24161, Unigene_49444, Unigene_36379, Unigene_40746, Unigene_40502, Unigene_37220, Unigene_36130, Unigene_1934, Unigene_13030, Unigene_1935, Unigene_44763, Unigene_19446, Unigene_2842, Unigene_64, Unigene_45614, Unigene_44647, Unigene_42588, Unigene_29247, Unigene_9479, Unigene_11835, Unigene_11836, Unigene_12804, Unigene_699, Unigene_31454, Unigene_28273, Unigene_31212, Unigene_455, Unigene_32302, Unigene_33756, Unigene_1502, Unigene_39063, Unigene_41020, Unigene_1760, Unigene_1761, Unigene_41260, Unigene_78, Unigene_9244, Unigene_9362, Unigene_8038, Unigene_10735, Unigene_41021, Unigene_28266, Unigene_34973, Unigene_207, Unigene_27050, Unigene_446, Unigene_30255, Unigene_44648, Unigene_22716, Unigene_1757, Unigene_20657, Unigene_16045, Unigene_18584, Unigene_16074, Unigene_43891, Unigene_18495, Unigene_1851, Unigene_1611, Unigene_43656, Unigene_35904, Unigene_11736, Unigene_11737, Unigene_429, Unigene_3908, Unigene_10415, Unigene_433, Unigene_1722, Unigene_1965, Unigene_16078, Unigene_16077, Unigene_20442, Unigene_20443, Unigene_1984, Unigene_42578, Unigene_41004, Unigene_8136, Unigene_417, Unigene_30352, Unigene_32531, Unigene_2822, Unigene_1733, Unigene_22859, Unigene_1618, Unigene_1673, Unigene_38161, Unigene_9155, Unigene_30438, Unigene_28232, Unigene_28231, Unigene_11913, Unigene_28230, Unigene_38046, Unigene_22925, Unigene_39132, Unigene_5906, Unigene_2891, Unigene_1562, Unigene_2894, Unigene_28229, Unigene_19633, Unigene_2413, Unigene_34805, Unigene_28103, Unigene_28466, Unigene_10939, Unigene_41219, Unigene_242, Unigene_44725, Unigene_2769, Unigene_15033, Unigene_18543, Unigene_5917, Unigene_2622, Unigene_1655, Unigene_41797, Unigene_42523, Unigene_9496, Unigene_9252, Unigene_40586, Unigene_41793, Unigene_40583, Unigene_9258, Unigene_41794, Unigene_33806, Unigene_49399, Unigene_29585, Unigene_26073, Unigene_356, Unigene_40339, Unigene_31755, Unigene_9490, Unigene_4912, Unigene_16039, Unigene_350, Unigene_20647, Unigene_1529, Unigene_16154, Unigene_21970, Unigene_19776, Unigene_20521, Unigene_26068, Unigene_10838, Unigene_30428, Unigene_42772, Unigene_41684, Unigene_32609, Unigene_32970, Unigene_7080, Unigene_9381, Unigene_36096, Unigene_37065, Unigene_44828, Unigene_15054, Unigene_47995, Unigene_1353, Unigene_2442, Unigene_41092, Unigene_41091, Unigene_32389, Unigene_32388, Unigene_33479, Unigene_970, Unigene_1348, Unigene_11320, Unigene_33353, Unigene_10470, Unigene_2210, Unigene_23653, Unigene_2453, Unigene_23652, Unigene_2454, Unigene_2213, Unigene_3667, Unigene_44010, Unigene_1360, Unigene_10100, Unigene_33007, Unigene_11433, Unigene_35669, Unigene_17099, Unigene_3992, Unigene_1695, Unigene_2301, Unigene_23441, Unigene_23440, Unigene_14609, Unigene_2780, Unigene_712, Unigene_33697, Unigene_33218, Unigene_2779, Unigene_13761, Unigene_10373, Unigene_21257, Unigene_44114, Unigene_21255, Unigene_23795, Unigene_1222, Unigene_1101, Unigene_1223, Unigene_2434, Unigene_21258, Unigene_1467, Unigene_21259, Unigene_1589, Unigene_2799, Unigene_1105, Unigene_23431, Unigene_45561, Unigene_45563, Unigene_31287, Unigene_37820, Unigene_14847, Unigene_19293, Unigene_19054, Unigene_33584, Unigene_11690, Unigene_5632, Unigene_1275, Unigene_4783, Unigene_3576, Unigene_42382, Unigene_1156, Unigene_2005, Unigene_2489, Unigene_1159, Unigene_47958, Unigene_2127, Unigene_10309, Unigene_10306, Unigene_1030, Unigene_4661, Unigene_30045, Unigene_32581, Unigene_1164, Unigene_25912, Unigene_24940, Unigene_43360, Unigene_3102, Unigene_5642, Unigene_2379, Unigene_4438, Unigene_22886, Unigene_36828, Unigene_879, Unigene_758, Unigene_12839, Unigene_35622, Unigene_36833, Unigene_886, Unigene_37805, Unigene_34537, Unigene_33688, Unigene_24939, Unigene_33440, Unigene_19267, Unigene_21103, Unigene_44544, Unigene_2224, Unigene_45514, Unigene_44546, Unigene_2346, Unigene_2589, Unigene_42248, Unigene_22551, Unigene_42487, Unigene_42486, Unigene_33533, Unigene_33896, Unigene_10574, Unigene_995, Unigene_10575, Unigene_34502, Unigene_4759, Unigene_20486, Unigene_7800, Unigene_6953, Unigene_17074, Unigene_46611, Unigene_3445, Unigene_23999, Unigene_1026, Unigene_45646, Unigene_1268, Unigene_36929, Unigene_2590, Unigene_14923, Unigene_12986, Unigene_30154, Unigene_11653, Unigene_860, Unigene_19373, Unigene_4223, Unigene_25328, Unigene_27748, Unigene_3015, Unigene_46028, Unigene_2289, Unigene_22179, Unigene_29803, Unigene_6649, Unigene_25689, Unigene_3139, Unigene_27746, Unigene_25321, Unigene_1190, Unigene_1192, Unigene_2040, Unigene_23143, Unigene_22175, Unigene_15408, Unigene_16976, Unigene_39730, Unigene_39731, Unigene_37670, Unigene_8818, Unigene_33194, Unigene_12255, Unigene_35496, Unigene_3025, Unigene_27972, Unigene_1080, Unigene_26762, Unigene_3020, Unigene_47488, Unigene_15877, Unigene_39624, Unigene_15875, Unigene_15876, Unigene_15874, Unigene_38890, Unigene_42909, Unigene_3354, Unigene_1177, Unigene_2146, Unigene_6984, Unigene_3116, Unigene_25584, Unigene_45154, Unigene_2384, Unigene_2021, Unigene_37899, Unigene_14338, Unigene_34261, Unigene_11181, Unigene_34263, Unigene_11182, Unigene_35352, Unigene_3244, Unigene_44079, Unigene_2398, Unigene_3367, Unigene_3006, Unigene_8815, Unigene_24129, Unigene_48432, Unigene_2152, Unigene_24000, Unigene_49400, Unigene_46498, Unigene_17959, Unigene_15415, Unigene_40944, Unigene_15414, Unigene_14683, Unigene_17831, Unigene_34394, Unigene_36696, Unigene_37543, Unigene_38631, Unigene_38872, Unigene_5113, Unigene_3179, Unigene_48404, Unigene_8864, Unigene_43193, Unigene_26734, Unigene_43192, Unigene_43191, Unigene_808, Unigene_3172, Unigene_3171, Unigene_811, Unigene_11248, Unigene_34124, Unigene_34245, Unigene_810, Unigene_12456, Unigene_19081, Unigene_34000, Unigene_45388, Unigene_49503, Unigene_27933, Unigene_26960, Unigene_7664, Unigene_44297, Unigene_45387, Unigene_12568, Unigene_11116, Unigene_922, Unigene_34259, Unigene_35588, Unigene_920, Unigene_39943, Unigene_13412, Unigene_14743, Unigene_11114, Unigene_48865, Unigene_23127, Unigene_48867, Unigene_48866, Unigene_44149, Unigene_3152, Unigene_5573, Unigene_6784, Unigene_44142, Unigene_45594, Unigene_47895, Unigene_43057, Unigene_43056, Unigene_14537, Unigene_38701, Unigene_37733, Unigene_10177, Unigene_12113, Unigene_10050, Unigene_33371, Unigene_14895, Unigene_33370, Unigene_9928, Unigene_11382, Unigene_7645, Unigene_4014, Unigene_8735, Unigene_6433, Unigene_6434, Unigene_7644, Unigene_23597, Unigene_44039, Unigene_43061, Unigene_3049, Unigene_45129, Unigene_7648, Unigene_24560, Unigene_44031, Unigene_44394, Unigene_6432, Unigene_5461, Unigene_45123, Unigene_6793, Unigene_12228, Unigene_33027, Unigene_12587, Unigene_36658, Unigene_38837, Unigene_13792, Unigene_12343, Unigene_10043] 2.3003992366543713E-7 6 | 00591 Linoleic acid metabolism 14 1139 32 15915 1.1867119509290092E-8 6.113092625109745 [Unigene_2891, Unigene_6433, Unigene_6434, Unigene_3102, Unigene_28229, Unigene_2005, Unigene_1159, Unigene_30428, Unigene_28232, Unigene_28231, Unigene_6432, Unigene_28266, Unigene_28230, Unigene_16895] 3.512667374749867E-7 7 | 00520 Amino sugar and nucleotide sugar metabolism 66 1139 536 15915 9.867442463451503E-6 1.7205292676215063 [Unigene_44763, Unigene_42382, Unigene_3179, Unigene_48404, Unigene_43193, Unigene_2842, Unigene_43192, Unigene_43191, Unigene_4661, Unigene_22175, Unigene_30045, Unigene_28273, Unigene_33756, Unigene_22925, Unigene_39132, Unigene_294, Unigene_14594, Unigene_1760, Unigene_1761, Unigene_78, Unigene_43721, Unigene_9362, Unigene_7664, Unigene_36833, Unigene_446, Unigene_34259, Unigene_41219, Unigene_1757, Unigene_38890, Unigene_15033, Unigene_15350, Unigene_14384, Unigene_16074, Unigene_21103, Unigene_44544, Unigene_1695, Unigene_9979, Unigene_43656, Unigene_9252, Unigene_6784, Unigene_29585, Unigene_14537, Unigene_26073, Unigene_38701, Unigene_37733, Unigene_356, Unigene_10415, Unigene_31755, Unigene_10050, Unigene_34261, Unigene_34263, Unigene_3244, Unigene_6953, Unigene_46611, Unigene_19776, Unigene_3049, Unigene_2434, Unigene_7648, Unigene_42772, Unigene_14847, Unigene_9381, Unigene_36096, Unigene_34394, Unigene_44828, Unigene_36696, Unigene_38631] 2.4339691409847042E-4 8 | Organismal Systems 136 1139 1331 15915 1.0302526342709228E-5 1.4277223947878936 [Unigene_49416, Unigene_16174, Unigene_20396, Unigene_6489, Unigene_25446, Unigene_45855, Unigene_6767, Unigene_31569, Unigene_24198, Unigene_38922, Unigene_38921, Unigene_38920, Unigene_39217, Unigene_48041, Unigene_14437, Unigene_40798, Unigene_40799, Unigene_35371, Unigene_19042, Unigene_31570, Unigene_8438, Unigene_36190, Unigene_15193, Unigene_1640, Unigene_22289, Unigene_6537, Unigene_2579, Unigene_30645, Unigene_48451, Unigene_27450, Unigene_46277, Unigene_2174, Unigene_2570, Unigene_13608, Unigene_29473, Unigene_32831, Unigene_42505, Unigene_48291, Unigene_40328, Unigene_14420, Unigene_13696, Unigene_36470, Unigene_11396, Unigene_14421, Unigene_18584, Unigene_28859, Unigene_23168, Unigene_26799, Unigene_2787, Unigene_28293, Unigene_30584, Unigene_32006, Unigene_37816, Unigene_31434, Unigene_32525, Unigene_39158, Unigene_37771, Unigene_395, Unigene_14282, Unigene_1069, Unigene_21535, Unigene_26029, Unigene_22987, Unigene_24366, Unigene_46375, Unigene_21132, Unigene_28322, Unigene_12942, Unigene_15419, Unigene_33104, Unigene_34791, Unigene_2121, Unigene_40481, Unigene_24830, Unigene_1796, Unigene_42149, Unigene_44041, Unigene_5074, Unigene_49333, Unigene_3571, Unigene_34921, Unigene_35175, Unigene_34882, Unigene_17980, Unigene_48815, Unigene_28863, Unigene_28862, Unigene_26960, Unigene_28865, Unigene_45384, Unigene_31815, Unigene_24144, Unigene_6451, Unigene_16805, Unigene_2808, Unigene_11996, Unigene_33321, Unigene_30694, Unigene_39707, Unigene_40801, Unigene_34538, Unigene_41855, Unigene_18786, Unigene_30170, Unigene_480, Unigene_18784, Unigene_35102, Unigene_33440, Unigene_6820, Unigene_15181, Unigene_89, Unigene_4405, Unigene_4767, Unigene_6702, Unigene_41277, Unigene_901, Unigene_31595, Unigene_29063, Unigene_40857, Unigene_10456, Unigene_16951, Unigene_34582, Unigene_35551, Unigene_19134, Unigene_3323, Unigene_14, Unigene_38031, Unigene_25535, Unigene_26624, Unigene_42533, Unigene_40474, Unigene_49567, Unigene_34632, Unigene_28086, Unigene_33666, Unigene_18966] 2.1782484267442368E-4 9 | Environmental adaptation 136 1139 1331 15915 1.0302526342709228E-5 1.4277223947878936 [Unigene_49416, Unigene_16174, Unigene_20396, Unigene_6489, Unigene_25446, Unigene_45855, Unigene_6767, Unigene_31569, Unigene_24198, Unigene_38922, Unigene_38921, Unigene_38920, Unigene_39217, Unigene_48041, Unigene_14437, Unigene_40798, Unigene_40799, Unigene_35371, Unigene_19042, Unigene_31570, Unigene_8438, Unigene_36190, Unigene_15193, Unigene_1640, Unigene_22289, Unigene_6537, Unigene_2579, Unigene_30645, Unigene_48451, Unigene_27450, Unigene_46277, Unigene_2174, Unigene_2570, Unigene_13608, Unigene_29473, Unigene_32831, Unigene_42505, Unigene_48291, Unigene_40328, Unigene_14420, Unigene_13696, Unigene_36470, Unigene_11396, Unigene_14421, Unigene_18584, Unigene_28859, Unigene_23168, Unigene_26799, Unigene_2787, Unigene_28293, Unigene_30584, Unigene_32006, Unigene_37816, Unigene_31434, Unigene_32525, Unigene_39158, Unigene_37771, Unigene_395, Unigene_14282, Unigene_1069, Unigene_21535, Unigene_26029, Unigene_22987, Unigene_24366, Unigene_46375, Unigene_21132, Unigene_28322, Unigene_12942, Unigene_15419, Unigene_33104, Unigene_34791, Unigene_2121, Unigene_40481, Unigene_24830, Unigene_1796, Unigene_42149, Unigene_44041, Unigene_5074, Unigene_49333, Unigene_3571, Unigene_34921, Unigene_35175, Unigene_34882, Unigene_17980, Unigene_48815, Unigene_28863, Unigene_28862, Unigene_26960, Unigene_28865, Unigene_45384, Unigene_31815, Unigene_24144, Unigene_6451, Unigene_16805, Unigene_2808, Unigene_11996, Unigene_33321, Unigene_30694, Unigene_39707, Unigene_40801, Unigene_34538, Unigene_41855, Unigene_18786, Unigene_30170, Unigene_480, Unigene_18784, Unigene_35102, Unigene_33440, Unigene_6820, Unigene_15181, Unigene_89, Unigene_4405, Unigene_4767, Unigene_6702, Unigene_41277, Unigene_901, Unigene_31595, Unigene_29063, Unigene_40857, Unigene_10456, Unigene_16951, Unigene_34582, Unigene_35551, Unigene_19134, Unigene_3323, Unigene_14, Unigene_38031, Unigene_25535, Unigene_26624, Unigene_42533, Unigene_40474, Unigene_49567, Unigene_34632, Unigene_28086, Unigene_33666, Unigene_18966] 2.1782484267442368E-4 10 | 04626 Plant-pathogen interaction 114 1139 1088 15915 1.9122427036832867E-5 1.4640599984506535 [Unigene_49416, Unigene_16174, Unigene_20396, Unigene_6489, Unigene_25446, Unigene_45855, Unigene_6767, Unigene_31569, Unigene_24198, Unigene_39217, Unigene_48041, Unigene_14437, Unigene_40798, Unigene_40799, Unigene_35371, Unigene_19042, Unigene_31570, Unigene_8438, Unigene_15193, Unigene_1640, Unigene_22289, Unigene_6537, Unigene_2579, Unigene_30645, Unigene_48451, Unigene_46277, Unigene_2174, Unigene_2570, Unigene_13608, Unigene_29473, Unigene_32831, Unigene_42505, Unigene_48291, Unigene_40328, Unigene_14420, Unigene_13696, Unigene_11396, Unigene_14421, Unigene_18584, Unigene_28859, Unigene_23168, Unigene_26799, Unigene_2787, Unigene_28293, Unigene_30584, Unigene_32006, Unigene_31434, Unigene_32525, Unigene_39158, Unigene_37771, Unigene_395, Unigene_14282, Unigene_1069, Unigene_26029, Unigene_22987, Unigene_24366, Unigene_46375, Unigene_28322, Unigene_15419, Unigene_33104, Unigene_2121, Unigene_40481, Unigene_24830, Unigene_42149, Unigene_44041, Unigene_5074, Unigene_49333, Unigene_3571, Unigene_35175, Unigene_34882, Unigene_17980, Unigene_48815, Unigene_28863, Unigene_28862, Unigene_26960, Unigene_28865, Unigene_45384, Unigene_24144, Unigene_6451, Unigene_16805, Unigene_2808, Unigene_11996, Unigene_33321, Unigene_30694, Unigene_39707, Unigene_40801, Unigene_34538, Unigene_41855, Unigene_18786, Unigene_30170, Unigene_480, Unigene_18784, Unigene_35102, Unigene_6820, Unigene_89, Unigene_4405, Unigene_4767, Unigene_6702, Unigene_41277, Unigene_31595, Unigene_29063, Unigene_40857, Unigene_10456, Unigene_16951, Unigene_34582, Unigene_35551, Unigene_19134, Unigene_3323, Unigene_25535, Unigene_26624, Unigene_42533, Unigene_28086, Unigene_33666, Unigene_18966] 3.144576890501405E-4 11 | Metabolism of terpenoids and polyketides 71 1139 608 15915 2.773584616144742E-5 1.631690136777413 [Unigene_25328, Unigene_64, Unigene_47958, Unigene_45614, Unigene_42700, Unigene_11913, Unigene_11248, Unigene_34245, Unigene_970, Unigene_19081, Unigene_39730, Unigene_39731, Unigene_8818, Unigene_12255, Unigene_17982, Unigene_45388, Unigene_5642, Unigene_41260, Unigene_3667, Unigene_28103, Unigene_26762, Unigene_7342, Unigene_8475, Unigene_45387, Unigene_29871, Unigene_12568, Unigene_37009, Unigene_11116, Unigene_920, Unigene_14743, Unigene_33007, Unigene_18623, Unigene_13179, Unigene_16045, Unigene_18543, Unigene_2926, Unigene_5917, Unigene_36277, Unigene_23127, Unigene_6984, Unigene_2346, Unigene_11736, Unigene_23441, Unigene_45594, Unigene_11737, Unigene_47895, Unigene_23440, Unigene_3198, Unigene_2780, Unigene_40339, Unigene_33218, Unigene_37219, Unigene_1722, Unigene_14178, Unigene_2779, Unigene_1529, Unigene_1101, Unigene_23597, Unigene_3006, Unigene_8815, Unigene_1268, Unigene_6793, Unigene_17959, Unigene_33027, Unigene_18769, Unigene_37220, Unigene_17831, Unigene_37065, Unigene_13030, Unigene_37543, Unigene_10043] 4.104905231894218E-4 12 | 00190 Oxidative phosphorylation 59 1139 494 15915 6.98499479864223E-5 1.6688141810594563 [Unigene_14390, Unigene_1353, Unigene_3576, Unigene_7698, Unigene_1156, Unigene_1673, Unigene_2489, Unigene_25689, Unigene_808, Unigene_9479, Unigene_2040, Unigene_11835, Unigene_11836, Unigene_34124, Unigene_699, Unigene_33479, Unigene_1348, Unigene_1901, Unigene_37, Unigene_1562, Unigene_3025, Unigene_43844, Unigene_32900, Unigene_43843, Unigene_44010, Unigene_879, Unigene_12839, Unigene_922, Unigene_39624, Unigene_44808, Unigene_48865, Unigene_48867, Unigene_48866, Unigene_41797, Unigene_28535, Unigene_41793, Unigene_5573, Unigene_22551, Unigene_41794, Unigene_2021, Unigene_3908, Unigene_33533, Unigene_433, Unigene_34502, Unigene_157, Unigene_275, Unigene_196, Unigene_350, Unigene_16114, Unigene_3367, Unigene_29419, Unigene_1589, Unigene_2799, Unigene_10838, Unigene_9500, Unigene_30154, Unigene_40746, Unigene_2822, Unigene_1733] 9.397993001809546E-4 13 | 00903 Limonene and pinene degradation 25 1139 162 15915 2.142111279379577E-4 2.1562936949240723 [Unigene_23127, Unigene_64, Unigene_11736, Unigene_45594, Unigene_11737, Unigene_34245, Unigene_970, Unigene_19081, Unigene_45388, Unigene_5642, Unigene_1101, Unigene_23597, Unigene_1268, Unigene_26762, Unigene_45387, Unigene_37009, Unigene_33027, Unigene_18769, Unigene_17831, Unigene_18543, Unigene_13030, Unigene_10043, Unigene_2926, Unigene_5917, Unigene_36277] 0.0026419372445681453 14 | Lipid metabolism 106 1139 1080 15915 4.7126692697030403E-4 1.37140278997171 [Unigene_47995, Unigene_3015, Unigene_8667, Unigene_2289, Unigene_29803, Unigene_64, Unigene_25321, Unigene_1190, Unigene_1192, Unigene_455, Unigene_41406, Unigene_16976, Unigene_37670, Unigene_38126, Unigene_33353, Unigene_10470, Unigene_23653, Unigene_2453, Unigene_23652, Unigene_2454, Unigene_9244, Unigene_47488, Unigene_28266, Unigene_41658, Unigene_15477, Unigene_18584, Unigene_2146, Unigene_1851, Unigene_9979, Unigene_48264, Unigene_35904, Unigene_3198, Unigene_429, Unigene_2780, Unigene_37899, Unigene_14338, Unigene_2779, Unigene_20724, Unigene_13072, Unigene_1223, Unigene_1105, Unigene_8770, Unigene_48277, Unigene_2152, Unigene_30352, Unigene_32531, Unigene_37820, Unigene_41877, Unigene_16585, Unigene_5113, Unigene_2005, Unigene_1159, Unigene_38161, Unigene_25001, Unigene_30438, Unigene_28232, Unigene_28231, Unigene_25000, Unigene_28230, Unigene_40758, Unigene_16895, Unigene_2891, Unigene_45388, Unigene_1164, Unigene_3102, Unigene_28229, Unigene_34805, Unigene_26960, Unigene_45387, Unigene_35622, Unigene_11116, Unigene_886, Unigene_920, Unigene_37805, Unigene_33688, Unigene_16769, Unigene_44149, Unigene_2346, Unigene_1655, Unigene_3152, Unigene_40583, Unigene_33896, Unigene_995, Unigene_14497, Unigene_33371, Unigene_33370, Unigene_20486, Unigene_6433, Unigene_6434, Unigene_21970, Unigene_3445, Unigene_45646, Unigene_49563, Unigene_24161, Unigene_30428, Unigene_44394, Unigene_6432, Unigene_5461, Unigene_32609, Unigene_14923, Unigene_12986, Unigene_36658, Unigene_38837, Unigene_1934, Unigene_1935, Unigene_15054] 0.005365192707046538 15 | 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 24 1139 163 15915 5.74700059034039E-4 2.057342303279704 [Unigene_23127, Unigene_5642, Unigene_1101, Unigene_23597, Unigene_1268, Unigene_26068, Unigene_26762, Unigene_11736, Unigene_9258, Unigene_45594, Unigene_11737, Unigene_37009, Unigene_34245, Unigene_33027, Unigene_18769, Unigene_970, Unigene_19081, Unigene_17831, Unigene_18543, Unigene_13030, Unigene_10043, Unigene_2926, Unigene_5917, Unigene_36277] 0.0060754006240741265 16 | 00073 Cutin, suberine and wax biosynthesis 15 1139 85 15915 9.425032209864348E-4 2.465785260548469 [Unigene_47995, Unigene_5113, Unigene_45646, Unigene_40583, Unigene_48277, Unigene_47488, Unigene_40758, Unigene_37820, Unigene_41658, Unigene_33688, Unigene_41406, Unigene_16769, Unigene_38837, Unigene_14497, Unigene_33353] 0.009299365113732824 17 | 00040 Pentose and glucuronate interconversions 30 1139 239 15915 0.0018760604082487253 1.7539058338629276 [Unigene_4223, Unigene_41092, Unigene_44546, Unigene_64, Unigene_19987, Unigene_41091, Unigene_42588, Unigene_29665, Unigene_3152, Unigene_31212, Unigene_32302, Unigene_9490, Unigene_16154, Unigene_11382, Unigene_4014, Unigene_45388, Unigene_5147, Unigene_2210, Unigene_12080, Unigene_39063, Unigene_7800, Unigene_48432, Unigene_45387, Unigene_9322, Unigene_32970, Unigene_36379, Unigene_30255, Unigene_13412, Unigene_15415, Unigene_15414] 0.01735355877630071 18 | 00908 Zeatin biosynthesis 8 1139 34 15915 0.0022797168673037715 3.287713680731292 [Unigene_6984, Unigene_14743, Unigene_14178, Unigene_8818, Unigene_17982, Unigene_7342, Unigene_8475, Unigene_29871] 0.019846946844762247 19 | 00460 Cyanoamino acid metabolism 21 1139 152 15915 0.0027459597060789376 1.9304503026662352 [Unigene_21257, Unigene_21255, Unigene_23795, Unigene_3116, Unigene_2301, Unigene_1026, Unigene_21258, Unigene_21259, Unigene_1611, Unigene_9244, Unigene_6461, Unigene_36929, Unigene_25267, Unigene_44297, Unigene_2384, Unigene_10177, Unigene_14115, Unigene_12456, Unigene_22716, Unigene_32581, Unigene_2928] 0.02257789091664904 20 | Metabolism of other amino acids 57 1139 580 15915 0.008991903661834 1.3731873088916473 [Unigene_22179, Unigene_8864, Unigene_64, Unigene_10306, Unigene_14115, Unigene_12456, Unigene_38046, Unigene_1502, Unigene_32581, Unigene_45388, Unigene_35, Unigene_2894, Unigene_34090, Unigene_22886, Unigene_9244, Unigene_8038, Unigene_3020, Unigene_1360, Unigene_44297, Unigene_758, Unigene_45387, Unigene_13374, Unigene_22716, Unigene_39545, Unigene_2769, Unigene_2927, Unigene_1717, Unigene_2928, Unigene_18495, Unigene_6346, Unigene_3116, Unigene_2301, Unigene_2224, Unigene_1611, Unigene_6461, Unigene_25267, Unigene_2384, Unigene_10177, Unigene_278, Unigene_20966, Unigene_11181, Unigene_11182, Unigene_7645, Unigene_21257, Unigene_44114, Unigene_21255, Unigene_23795, Unigene_7644, Unigene_1026, Unigene_21258, Unigene_21259, Unigene_36929, Unigene_46498, Unigene_7080, Unigene_12587, Unigene_1618, Unigene_38872] 0.07004219694481222 21 | Carbohydrate metabolism 182 1139 2193 15915 0.015466866108394539 1.159619941653285 [Unigene_4223, Unigene_8306, Unigene_27748, Unigene_44763, Unigene_2289, Unigene_41092, Unigene_2842, Unigene_64, Unigene_3139, Unigene_41091, Unigene_27746, Unigene_8307, Unigene_42588, Unigene_25162, Unigene_22175, Unigene_28273, Unigene_31212, Unigene_455, Unigene_32302, Unigene_33756, Unigene_11320, Unigene_294, Unigene_2210, Unigene_12080, Unigene_39063, Unigene_1760, Unigene_1761, Unigene_2213, Unigene_78, Unigene_1080, Unigene_43721, Unigene_9362, Unigene_8038, Unigene_27330, Unigene_1360, Unigene_446, Unigene_30255, Unigene_35669, Unigene_1757, Unigene_38890, Unigene_15350, Unigene_14384, Unigene_17099, Unigene_16074, Unigene_43891, Unigene_3354, Unigene_1695, Unigene_3116, Unigene_2301, Unigene_19987, Unigene_1611, Unigene_9979, Unigene_25584, Unigene_6461, Unigene_43656, Unigene_29665, Unigene_35904, Unigene_2384, Unigene_712, Unigene_10415, Unigene_18415, Unigene_18413, Unigene_34261, Unigene_13761, Unigene_34263, Unigene_17562, Unigene_3244, Unigene_20442, Unigene_5147, Unigene_44079, Unigene_21257, Unigene_20443, Unigene_21255, Unigene_23795, Unigene_1222, Unigene_2434, Unigene_21258, Unigene_1984, Unigene_21259, Unigene_23431, Unigene_48432, Unigene_8136, Unigene_24000, Unigene_49400, Unigene_31287, Unigene_14847, Unigene_15415, Unigene_15414, Unigene_34394, Unigene_36696, Unigene_38631, Unigene_11690, Unigene_1275, Unigene_7137, Unigene_42382, Unigene_3179, Unigene_48404, Unigene_43193, Unigene_43192, Unigene_43191, Unigene_47272, Unigene_30438, Unigene_4661, Unigene_30045, Unigene_14115, Unigene_22925, Unigene_34000, Unigene_39132, Unigene_32581, Unigene_14594, Unigene_45388, Unigene_2413, Unigene_4438, Unigene_27933, Unigene_7664, Unigene_44297, Unigene_45387, Unigene_9322, Unigene_36833, Unigene_34259, Unigene_39943, Unigene_13412, Unigene_41219, Unigene_11114, Unigene_15033, Unigene_2927, Unigene_2928, Unigene_19267, Unigene_21103, Unigene_44544, Unigene_45514, Unigene_44546, Unigene_42523, Unigene_9496, Unigene_25267, Unigene_9252, Unigene_3152, Unigene_42487, Unigene_6784, Unigene_42486, Unigene_27200, Unigene_49399, Unigene_29585, Unigene_14537, Unigene_26073, Unigene_38701, Unigene_37733, Unigene_10177, Unigene_356, Unigene_31755, Unigene_9490, Unigene_4759, Unigene_10050, Unigene_4912, Unigene_36360, Unigene_16154, Unigene_11382, Unigene_4014, Unigene_7800, Unigene_6953, Unigene_17074, Unigene_46611, Unigene_19776, Unigene_44039, Unigene_43061, Unigene_23999, Unigene_3049, Unigene_1026, Unigene_7648, Unigene_36929, Unigene_44031, Unigene_42772, Unigene_49444, Unigene_32970, Unigene_7080, Unigene_36379, Unigene_9381, Unigene_36658, Unigene_11653, Unigene_40502, Unigene_36096, Unigene_44828] 0.11445480920211959 22 | 00430 Taurine and hypotaurine metabolism 5 1139 22 15915 0.017596911485511124 3.1756325325245434 [Unigene_9244, Unigene_8038, Unigene_1360, Unigene_2927, Unigene_758] 0.12401632856455459 23 | 00944 Flavone and flavonol biosynthesis 3 1139 9 15915 0.022149459345378486 4.657594381035996 [Unigene_14178, Unigene_17982, Unigene_29871] 0.14900545377800073 24 | 00909 Sesquiterpenoid and triterpenoid biosynthesis 7 1139 41 15915 0.024921740279188365 2.3855971219940475 [Unigene_11116, Unigene_920, Unigene_2346, Unigene_2779, Unigene_3198, Unigene_6793, Unigene_2780] 0.16036598092695123 25 | 03010 Ribosome 92 1139 1060 15915 0.02930262076857426 1.2127321218546556 [Unigene_40084, Unigene_40085, Unigene_1793, Unigene_2245, Unigene_40083, Unigene_1158, Unigene_3137, Unigene_3338, Unigene_20477, Unigene_1435, Unigene_20676, Unigene_606, Unigene_2041, Unigene_967, Unigene_968, Unigene_35334, Unigene_13307, Unigene_453, Unigene_330, Unigene_3449, Unigene_38840, Unigene_2573, Unigene_36, Unigene_1289, Unigene_2973, Unigene_3148, Unigene_1202, Unigene_24428, Unigene_3381, Unigene_2050, Unigene_3380, Unigene_2051, Unigene_2294, Unigene_519, Unigene_2097, Unigene_2053, Unigene_2098, Unigene_49181, Unigene_326, Unigene_884, Unigene_169, Unigene_401, Unigene_32558, Unigene_17898, Unigene_3339, Unigene_441, Unigene_1911, Unigene_3035, Unigene_2144, Unigene_25945, Unigene_1453, Unigene_21349, Unigene_1576, Unigene_3313, Unigene_1378, Unigene_2665, Unigene_2467, Unigene_3118, Unigene_1610, Unigene_2546, Unigene_2180, Unigene_2061, Unigene_2062, Unigene_21341, Unigene_1690, Unigene_2186, Unigene_757, Unigene_38866, Unigene_357, Unigene_277, Unigene_870, Unigene_1406, Unigene_2814, Unigene_1925, Unigene_1066, Unigene_2111, Unigene_1341, Unigene_16183, Unigene_3124, Unigene_2432, Unigene_3168, Unigene_45965, Unigene_3448, Unigene_49445, Unigene_2274, Unigene_867, Unigene_38839, Unigene_31920, Unigene_663, Unigene_2547, Unigene_2945, Unigene_39645] 0.18069949473954128 26 | 00906 Carotenoid biosynthesis 11 1139 83 15915 0.033979597252511984 1.8518146334239503 [Unigene_25328, Unigene_47958, Unigene_45614, Unigene_37219, Unigene_42700, Unigene_39730, Unigene_39731, Unigene_37220, Unigene_37065, Unigene_1529, Unigene_47895] 0.20115921573487092 27 | 04141 Protein processing in endoplasmic reticulum 67 1139 751 15915 0.03522222780498663 1.246573196522284 [Unigene_46665, Unigene_5433, Unigene_24515, Unigene_26338, Unigene_40961, Unigene_3290, Unigene_26650, Unigene_15208, Unigene_15209, Unigene_1547, Unigene_36143, Unigene_35890, Unigene_2835, Unigene_17220, Unigene_25515, Unigene_25516, Unigene_18186, Unigene_26649, Unigene_18183, Unigene_18182, Unigene_9044, Unigene_36905, Unigene_3022, Unigene_6451, Unigene_3021, Unigene_7145, Unigene_32359, Unigene_18786, Unigene_15352, Unigene_18784, Unigene_15397, Unigene_37762, Unigene_24656, Unigene_44982, Unigene_24215, Unigene_24214, Unigene_19226, Unigene_44469, Unigene_9450, Unigene_24014, Unigene_1491, Unigene_29266, Unigene_23681, Unigene_27361, Unigene_31036, Unigene_40611, Unigene_38189, Unigene_18976, Unigene_16677, Unigene_18179, Unigene_46731, Unigene_46733, Unigene_46732, Unigene_1586, Unigene_46734, Unigene_30901, Unigene_44470, Unigene_11967, Unigene_7480, Unigene_18803, Unigene_40108, Unigene_2747, Unigene_12024, Unigene_24518, Unigene_1616, Unigene_32451, Unigene_38157] 0.20049575827453925 28 | 00480 Glutathione metabolism 22 1139 215 15915 0.05721192689698129 1.4297731588296547 [Unigene_7645, Unigene_44114, Unigene_35, Unigene_7644, Unigene_6346, Unigene_22179, Unigene_2224, Unigene_22886, Unigene_9244, Unigene_10306, Unigene_3020, Unigene_46498, Unigene_7080, Unigene_12587, Unigene_278, Unigene_38046, Unigene_1502, Unigene_13374, Unigene_2769, Unigene_20966, Unigene_1717, Unigene_1618] 0.3136061178056752 29 | 00232 Caffeine metabolism 2 1139 6 15915 0.0632703885417285 4.657594381035996 [Unigene_27972, Unigene_42578] 0.33442919657770787 30 | Signal transduction 109 1139 1333 15915 0.07483775971294437 1.1425606621146067 [Unigene_23787, Unigene_21246, Unigene_22972, Unigene_7459, Unigene_4224, Unigene_8705, Unigene_25162, Unigene_457, Unigene_17427, Unigene_42976, Unigene_16457, Unigene_35496, Unigene_18583, Unigene_8438, Unigene_16161, Unigene_1640, Unigene_1125, Unigene_48617, Unigene_6537, Unigene_27179, Unigene_46277, Unigene_40295, Unigene_27178, Unigene_27177, Unigene_38536, Unigene_15913, Unigene_11555, Unigene_20899, Unigene_5015, Unigene_26799, Unigene_2787, Unigene_20571, Unigene_42563, Unigene_10777, Unigene_37419, Unigene_8918, Unigene_39399, Unigene_7569, Unigene_44238, Unigene_26784, Unigene_48672, Unigene_29256, Unigene_12936, Unigene_21132, Unigene_8136, Unigene_45287, Unigene_44199, Unigene_49400, Unigene_14601, Unigene_22617, Unigene_21647, Unigene_19293, Unigene_37148, Unigene_2121, Unigene_18032, Unigene_21320, Unigene_41214, Unigene_42149, Unigene_22254, Unigene_49333, Unigene_32464, Unigene_39937, Unigene_34921, Unigene_1945, Unigene_34362, Unigene_14231, Unigene_17221, Unigene_28466, Unigene_24144, Unigene_48016, Unigene_27012, Unigene_16805, Unigene_2808, Unigene_39940, Unigene_4767, Unigene_8320, Unigene_9496, Unigene_29104, Unigene_43335, Unigene_49399, Unigene_901, Unigene_17807, Unigene_29066, Unigene_35799, Unigene_33774, Unigene_41304, Unigene_4912, Unigene_5605, Unigene_32162, Unigene_35551, Unigene_24722, Unigene_26869, Unigene_24725, Unigene_39081, Unigene_24724, Unigene_2358, Unigene_25535, Unigene_39082, Unigene_24723, Unigene_42931, Unigene_40474, Unigene_41286, Unigene_24682, Unigene_31363, Unigene_31489, Unigene_18966, Unigene_40502, Unigene_13798, Unigene_36650] 0.3819306357764058 31 | 04075 Plant hormone signal transduction 91 1139 1098 15915 0.07617100933141308 1.1580357614051249 [Unigene_23787, Unigene_18032, Unigene_21246, Unigene_22972, Unigene_7459, Unigene_21320, Unigene_4224, Unigene_8705, Unigene_41214, Unigene_22254, Unigene_32464, Unigene_39937, Unigene_457, Unigene_17427, Unigene_34921, Unigene_42976, Unigene_16457, Unigene_1945, Unigene_34362, Unigene_14231, Unigene_17221, Unigene_35496, Unigene_18583, Unigene_8438, Unigene_16161, Unigene_1640, Unigene_1125, Unigene_48617, Unigene_6537, Unigene_27179, Unigene_28466, Unigene_40295, Unigene_27178, Unigene_48016, Unigene_27012, Unigene_27177, Unigene_38536, Unigene_15913, Unigene_11555, Unigene_39940, Unigene_20899, Unigene_5015, Unigene_26799, Unigene_8320, Unigene_29104, Unigene_43335, Unigene_20571, Unigene_42563, Unigene_901, Unigene_17807, Unigene_29066, Unigene_35799, Unigene_10777, Unigene_33774, Unigene_37419, Unigene_41304, Unigene_8918, Unigene_5605, Unigene_32162, Unigene_39399, Unigene_24722, Unigene_7569, Unigene_26869, Unigene_44238, Unigene_24725, Unigene_39081, Unigene_24724, Unigene_2358, Unigene_25535, Unigene_39082, Unigene_24723, Unigene_42931, Unigene_26784, Unigene_48672, Unigene_29256, Unigene_12936, Unigene_40474, Unigene_21132, Unigene_45287, Unigene_44199, Unigene_41286, Unigene_24682, Unigene_31363, Unigene_31489, Unigene_14601, Unigene_13798, Unigene_22617, Unigene_21647, Unigene_19293, Unigene_37148, Unigene_36650] 0.3757769793683045 32 | 00960 Tropane, piperidine and pyridine alkaloid biosynthesis 11 1139 96 15915 0.08117073522995122 1.6010480684811237 [Unigene_18495, Unigene_24940, Unigene_30982, Unigene_12113, Unigene_34090, Unigene_24129, Unigene_44725, Unigene_24939, Unigene_11181, Unigene_11182, Unigene_38872] 0.38752480045267035 33 | 00904 Diterpenoid biosynthesis 7 1139 54 15915 0.08894355836552825 1.811286703736221 [Unigene_3006, Unigene_3667, Unigene_1722, Unigene_13179, Unigene_16045, Unigene_23441, Unigene_23440] 0.4113639574405682 34 | 00380 Tryptophan metabolism 14 1139 134 15915 0.09850711446314586 1.459843014951581 [Unigene_3354, Unigene_45388, Unigene_1275, Unigene_2413, Unigene_64, Unigene_3139, Unigene_43057, Unigene_45387, Unigene_43056, Unigene_38428, Unigene_39943, Unigene_37166, Unigene_20647, Unigene_9928] 0.44178948304683596 35 | Environmental Information Processing 116 1139 1447 15915 0.1020298878663054 1.120140182861456 [Unigene_23787, Unigene_21246, Unigene_22972, Unigene_7459, Unigene_4224, Unigene_8705, Unigene_25162, Unigene_457, Unigene_17427, Unigene_42976, Unigene_16457, Unigene_35496, Unigene_18583, Unigene_8438, Unigene_16161, Unigene_1640, Unigene_1125, Unigene_48617, Unigene_6537, Unigene_27179, Unigene_46277, Unigene_40295, Unigene_27178, Unigene_27177, Unigene_38536, Unigene_15913, Unigene_11555, Unigene_20899, Unigene_30493, Unigene_5015, Unigene_26799, Unigene_2787, Unigene_20571, Unigene_42563, Unigene_10777, Unigene_37419, Unigene_8918, Unigene_39399, Unigene_4970, Unigene_7569, Unigene_44238, Unigene_26784, Unigene_48672, Unigene_29256, Unigene_12936, Unigene_21132, Unigene_8136, Unigene_45287, Unigene_44199, Unigene_49400, Unigene_14601, Unigene_22617, Unigene_21647, Unigene_19293, Unigene_37148, Unigene_2121, Unigene_18032, Unigene_9954, Unigene_21320, Unigene_41214, Unigene_42149, Unigene_22254, Unigene_49333, Unigene_32464, Unigene_39937, Unigene_34921, Unigene_1945, Unigene_34362, Unigene_14231, Unigene_17221, Unigene_28466, Unigene_28462, Unigene_24144, Unigene_48016, Unigene_27012, Unigene_16805, Unigene_2808, Unigene_11356, Unigene_39940, Unigene_21464, Unigene_4767, Unigene_8320, Unigene_9496, Unigene_29104, Unigene_43335, Unigene_49399, Unigene_901, Unigene_17807, Unigene_29066, Unigene_35799, Unigene_33774, Unigene_41304, Unigene_4912, Unigene_5605, Unigene_32162, Unigene_35551, Unigene_24722, Unigene_26869, Unigene_24725, Unigene_39081, Unigene_24724, Unigene_2358, Unigene_25535, Unigene_39082, Unigene_24723, Unigene_42931, Unigene_40474, Unigene_41286, Unigene_24682, Unigene_31363, Unigene_31489, Unigene_18966, Unigene_40502, Unigene_13798, Unigene_15973, Unigene_36650] 0.4441301001239176 36 | 00500 Starch and sucrose metabolism 54 1139 643 15915 0.12257528227346148 1.1734530166840302 [Unigene_42382, Unigene_43193, Unigene_43192, Unigene_43191, Unigene_31212, Unigene_14115, Unigene_32302, Unigene_32581, Unigene_14594, Unigene_44297, Unigene_9322, Unigene_30255, Unigene_2928, Unigene_43891, Unigene_21103, Unigene_3116, Unigene_2301, Unigene_44546, Unigene_19987, Unigene_1611, Unigene_6461, Unigene_42523, Unigene_25267, Unigene_2384, Unigene_10177, Unigene_31755, Unigene_9490, Unigene_36360, Unigene_13761, Unigene_17562, Unigene_16154, Unigene_11382, Unigene_20442, Unigene_5147, Unigene_21257, Unigene_20443, Unigene_7800, Unigene_6953, Unigene_21255, Unigene_23795, Unigene_43061, Unigene_23999, Unigene_21258, Unigene_21259, Unigene_36929, Unigene_44031, Unigene_48432, Unigene_24000, Unigene_32970, Unigene_31287, Unigene_36379, Unigene_15415, Unigene_15414, Unigene_38631] 0.5183183364706371 37 | 03060 Protein export 16 1139 164 15915 0.12778422008084622 1.3631983554251699 [Unigene_44982, Unigene_27707, Unigene_27706, Unigene_3267, Unigene_2313, Unigene_9044, Unigene_48211, Unigene_30672, Unigene_30673, Unigene_30674, Unigene_39636, Unigene_38189, Unigene_18854, Unigene_1616, Unigene_30096, Unigene_30097] 0.5253351269990345 38 | 04712 Circadian rhythm - plant 22 1139 243 15915 0.15142631926839656 1.2650256343554558 [Unigene_36190, Unigene_15181, Unigene_14, Unigene_38031, Unigene_21535, Unigene_1796, Unigene_31815, Unigene_40474, Unigene_21132, Unigene_49567, Unigene_27450, Unigene_901, Unigene_12942, Unigene_34632, Unigene_38922, Unigene_38921, Unigene_38920, Unigene_37816, Unigene_34921, Unigene_36470, Unigene_34791, Unigene_33440] 0.6057052770735862 39 | 00350 Tyrosine metabolism 10 1139 102 15915 0.19346963932122818 1.3698807003047049 [Unigene_18495, Unigene_1177, Unigene_2289, Unigene_30982, Unigene_34090, Unigene_36658, Unigene_11181, Unigene_11182, Unigene_44142, Unigene_38872] 0.7535133320932045 40 | 00053 Ascorbate and aldarate metabolism 14 1139 154 15915 0.2127847754697052 1.2702530130098173 [Unigene_45388, Unigene_19267, Unigene_2213, Unigene_44039, Unigene_1984, Unigene_64, Unigene_25584, Unigene_27330, Unigene_23431, Unigene_49444, Unigene_45387, Unigene_7080, Unigene_4759, Unigene_34000] 0.8074909428081121 41 | 00561 Glycerolipid metabolism 17 1139 192 15915 0.21378496680047887 1.2371735074626864 [Unigene_45388, Unigene_1223, Unigene_3445, Unigene_64, Unigene_38161, Unigene_9979, Unigene_49563, Unigene_48264, Unigene_3152, Unigene_429, Unigene_45387, Unigene_886, Unigene_455, Unigene_995, Unigene_41877, Unigene_37670, Unigene_38126] 0.7910043771617719 42 | 00950 Isoquinoline alkaloid biosynthesis 7 1139 69 15915 0.22260811742411457 1.4175287246631296 [Unigene_18495, Unigene_1177, Unigene_30982, Unigene_34090, Unigene_11181, Unigene_11182, Unigene_38872] 0.8035610092382672 43 | 00941 Flavonoid biosynthesis 9 1139 95 15915 0.23881501324752397 1.3237373503997045 [Unigene_32389, Unigene_32388, Unigene_35588, Unigene_26068, Unigene_14895, Unigene_41004, Unigene_9258, Unigene_10373, Unigene_33440] 0.8415386181103225 44 | 00410 beta-Alanine metabolism 12 1139 137 15915 0.2755432589144078 1.2238934139948605 [Unigene_18495, Unigene_45388, Unigene_34090, Unigene_64, Unigene_39545, Unigene_8038, Unigene_11181, Unigene_11182, Unigene_1360, Unigene_2927, Unigene_38872, Unigene_45387] 0.9483814492867989 45 | 00750 Vitamin B6 metabolism 7 1139 74 15915 0.2778011039946444 1.3217497567804857 [Unigene_4783, Unigene_46028, Unigene_2379, Unigene_1467, Unigene_16039, Unigene_3194, Unigene_9731] 0.9344218952547131 46 | 00603 Glycosphingolipid biosynthesis - globo series 2 1139 16 15915 0.31930595961275743 1.7465978928884986 [Unigene_3992, Unigene_455] 1.0501618227264022 47 | 00966 Glucosinolate biosynthesis 6 1139 65 15915 0.32069281343266864 1.289795367056122 [Unigene_37166, Unigene_22716, Unigene_48462, Unigene_9928, Unigene_43057, Unigene_43056] 1.0317942693051079 48 | 00514 Other types of O-glycan biosynthesis 3 1139 29 15915 0.3443925603390211 1.4454603251491023 [Unigene_5632, Unigene_27050, Unigene_10939] 1.0844701900037261 49 | 00905 Brassinosteroid biosynthesis 5 1139 55 15915 0.3580954082870943 1.2702530130098173 [Unigene_11248, Unigene_17959, Unigene_33007, Unigene_11913, Unigene_37543] 1.1041275088852074 50 | 00564 Glycerophospholipid metabolism 21 1139 267 15915 0.3585372472414654 1.0989829438399543 [Unigene_3015, Unigene_23653, Unigene_23652, Unigene_3445, Unigene_1851, Unigene_25001, Unigene_8770, Unigene_49563, Unigene_24161, Unigene_48264, Unigene_1192, Unigene_5461, Unigene_25000, Unigene_429, Unigene_35622, Unigene_30352, Unigene_37899, Unigene_37805, Unigene_33371, Unigene_37670, Unigene_33370] 1.0829288284027936 51 | 00565 Ether lipid metabolism 7 1139 81 15915 0.35970394972616937 1.2075244691574807 [Unigene_37899, Unigene_23653, Unigene_23652, Unigene_1851, Unigene_33371, Unigene_33370, Unigene_1192] 1.0647236911894613 52 | Energy metabolism 86 1139 1155 15915 0.3634257270755126 1.040397705893755 [Unigene_14390, Unigene_4223, Unigene_27748, Unigene_1353, Unigene_7137, Unigene_3576, Unigene_7698, Unigene_1156, Unigene_1673, Unigene_6649, Unigene_2489, Unigene_25689, Unigene_27746, Unigene_808, Unigene_47272, Unigene_3172, Unigene_3171, Unigene_9479, Unigene_2040, Unigene_11835, Unigene_11836, Unigene_12804, Unigene_23143, Unigene_34124, Unigene_699, Unigene_33479, Unigene_1348, Unigene_1901, Unigene_37, Unigene_12080, Unigene_1562, Unigene_3025, Unigene_43844, Unigene_32900, Unigene_43843, Unigene_33915, Unigene_24381, Unigene_36828, Unigene_44010, Unigene_879, Unigene_12839, Unigene_922, Unigene_42508, Unigene_39624, Unigene_11114, Unigene_11433, Unigene_44808, Unigene_17099, Unigene_48865, Unigene_6389, Unigene_48867, Unigene_48866, Unigene_2622, Unigene_41797, Unigene_28535, Unigene_41793, Unigene_5573, Unigene_22551, Unigene_41794, Unigene_2021, Unigene_3908, Unigene_33533, Unigene_33697, Unigene_433, Unigene_34502, Unigene_157, Unigene_275, Unigene_16237, Unigene_1965, Unigene_196, Unigene_350, Unigene_16114, Unigene_20728, Unigene_44079, Unigene_3367, Unigene_29419, Unigene_1589, Unigene_2799, Unigene_10838, Unigene_9500, Unigene_30154, Unigene_40746, Unigene_11653, Unigene_2822, Unigene_1733, Unigene_13792] 1.0546472079838403 53 | 00730 Thiamine metabolism 2 1139 19 15915 0.3988864656361433 1.4708192782218934 [Unigene_2127, Unigene_28103] 1.135292248349023 54 | 04070 Phosphatidylinositol signaling system 18 1139 235 15915 0.4176028537016039 1.0702557301103992 [Unigene_2121, Unigene_2787, Unigene_4767, Unigene_42149, Unigene_9496, Unigene_25162, Unigene_8136, Unigene_49333, Unigene_24144, Unigene_46277, Unigene_49399, Unigene_49400, Unigene_16805, Unigene_2808, Unigene_18966, Unigene_40502, Unigene_4912, Unigene_35551] 1.1661362707139127 55 | Endocrine and metabolic diseases 4 1139 50 15915 0.48493054293240945 1.1178226514486391 [Unigene_28371, Unigene_39855, Unigene_25162, Unigene_8136] 1.3290688954443814 56 | 04933 AGE-RAGE signaling pathway in diabetic complications 4 1139 50 15915 0.48493054293240945 1.1178226514486391 [Unigene_28371, Unigene_39855, Unigene_25162, Unigene_8136] 1.3290688954443814 57 | Human Diseases 4 1139 50 15915 0.48493054293240945 1.1178226514486391 [Unigene_28371, Unigene_39855, Unigene_25162, Unigene_8136] 1.3290688954443814 58 | 00360 Phenylalanine metabolism 9 1139 120 15915 0.4922373427082134 1.0479587357330993 [Unigene_18495, Unigene_30982, Unigene_34090, Unigene_26068, Unigene_11181, Unigene_9258, Unigene_11182, Unigene_44142, Unigene_38872] 1.2780899424704488 59 | 00260 Glycine, serine and threonine metabolism 13 1139 176 15915 0.49469305297796584 1.0320805730704765 [Unigene_18495, Unigene_37393, Unigene_34090, Unigene_1026, Unigene_9155, Unigene_3073, Unigene_33806, Unigene_34973, Unigene_20802, Unigene_11181, Unigene_11182, Unigene_38872, Unigene_17099] 1.2623202041506714 60 | 00901 Indole alkaloid biosynthesis 2 1139 23 15915 0.4975677236212993 1.2150246211398252 [Unigene_12228, Unigene_15796] 1.2481359846771576 61 | 00100 Steroid biosynthesis 8 1139 115 15915 0.5854985107860852 0.9720196969118602 [Unigene_11116, Unigene_920, Unigene_2346, Unigene_34805, Unigene_2779, Unigene_2152, Unigene_3198, Unigene_2780] 1.4442296599390099 62 | 00650 Butanoate metabolism 3 1139 42 15915 0.5867727717567238 0.9980559387934277 [Unigene_8038, Unigene_1360, Unigene_2927] 1.4236454134425431 63 | 00590 Arachidonic acid metabolism 3 1139 43 15915 0.6029810354137863 0.9748453355656737 [Unigene_9244, Unigene_25321, Unigene_20724] 1.4393740845361351 64 | 00300 Lysine biosynthesis 3 1139 43 15915 0.6029810354137863 0.9748453355656737 [Unigene_34973, Unigene_207, Unigene_22859] 1.4393740845361351 65 | 00860 Porphyrin and chlorophyll metabolism 8 1139 117 15915 0.6052824836950597 0.9554039755971274 [Unigene_33533, Unigene_43360, Unigene_31454, Unigene_49503, Unigene_26734, Unigene_47253, Unigene_1901, Unigene_47252] 1.3997157435448255 66 | 00902 Monoterpenoid biosynthesis 2 1139 30 15915 0.643263854161883 0.9315188762071993 [Unigene_41260, Unigene_12255] 1.4646623140916721 67 | 01053 Biosynthesis of siderophore group nonribosomal peptides 1 1139 15 15915 0.6718800896723617 0.9315188762071993 [Unigene_12568] 1.5066402010834776 68 | 00600 Sphingolipid metabolism 9 1139 140 15915 0.6788141030843936 0.8982503449140851 [Unigene_20486, Unigene_33896, Unigene_21970, Unigene_455, Unigene_44149, Unigene_30438, Unigene_35904, Unigene_15054, Unigene_10470] 1.4994699590520935 69 | 04120 Ubiquitin mediated proteolysis 25 1139 381 15915 0.7045307201964115 0.9168492876055111 [Unigene_40961, Unigene_3290, Unigene_9450, Unigene_49055, Unigene_15208, Unigene_15209, Unigene_35159, Unigene_31036, Unigene_1920, Unigene_1547, Unigene_21417, Unigene_24705, Unigene_17220, Unigene_1186, Unigene_24704, Unigene_1586, Unigene_2611, Unigene_45361, Unigene_11967, Unigene_7145, Unigene_18803, Unigene_40108, Unigene_18765, Unigene_15352, Unigene_37762] 1.5333903910157192 70 | 02010 ABC transporters 7 1139 114 15915 0.715943027218203 0.8579779122961047 [Unigene_4970, Unigene_9954, Unigene_21464, Unigene_11356, Unigene_15973, Unigene_28462, Unigene_30493] 1.535645913453537 71 | Membrane transport 7 1139 114 15915 0.715943027218203 0.8579779122961047 [Unigene_4970, Unigene_9954, Unigene_21464, Unigene_11356, Unigene_15973, Unigene_28462, Unigene_30493] 1.535645913453537 72 | 00920 Sulfur metabolism 7 1139 118 15915 0.7487188008583178 0.828893915269118 [Unigene_6389, Unigene_6649, Unigene_13792, Unigene_3172, Unigene_33915, Unigene_3171, Unigene_24381] 1.560709613056775 73 | 00562 Inositol phosphate metabolism 10 1139 166 15915 0.7579681633169021 0.8417339242836138 [Unigene_8306, Unigene_19267, Unigene_40502, Unigene_8307, Unigene_9496, Unigene_4912, Unigene_25162, Unigene_8136, Unigene_49399, Unigene_49400] 1.5580456690402988 74 | 04130 SNARE interactions in vesicular transport 7 1139 120 15915 0.7640632344179172 0.8150790166812995 [Unigene_28593, Unigene_45722, Unigene_31865, Unigene_31866, Unigene_40035, Unigene_35970, Unigene_17178] 1.5490597081349555 75 | 00261 Monobactam biosynthesis 2 1139 39 15915 0.7790569752161547 0.7165529816978456 [Unigene_34973, Unigene_22859] 1.5581139504323094 76 | 00531 Glycosaminoglycan degradation 6 1139 107 15915 0.7864704893107239 0.7835205500808219 [Unigene_8735, Unigene_25912, Unigene_30438, Unigene_20657, Unigene_35904, Unigene_41684] 1.5519684322398286 77 | 00511 Other glycan degradation 6 1139 107 15915 0.7864704893107239 0.7835205500808219 [Unigene_21970, Unigene_19633, Unigene_30438, Unigene_35904, Unigene_15054, Unigene_10470] 1.5519684322398286 78 | 00030 Pentose phosphate pathway 10 1139 175 15915 0.8117896448722676 0.7984447510347423 [Unigene_4223, Unigene_712, Unigene_44079, Unigene_12080, Unigene_17074, Unigene_1222, Unigene_4438, Unigene_11653, Unigene_27746, Unigene_1080] 1.5603229537804624 79 | Glycan biosynthesis and metabolism 21 1139 356 15915 0.850518092329654 0.8242372078799656 [Unigene_3992, Unigene_5632, Unigene_8735, Unigene_25912, Unigene_21970, Unigene_19633, Unigene_28445, Unigene_28466, Unigene_10939, Unigene_30438, Unigene_29743, Unigene_35904, Unigene_41684, Unigene_27050, Unigene_455, Unigene_40611, Unigene_20657, Unigene_19293, Unigene_15054, Unigene_10470, Unigene_35496] 1.6138035598049847 80 | 00900 Terpenoid backbone biosynthesis 6 1139 117 15915 0.8513990412982873 0.7165529816978455 [Unigene_40339, Unigene_8815, Unigene_33218, Unigene_18623, Unigene_28103, Unigene_6793] 1.5950260520524875 81 | 00910 Nitrogen metabolism 5 1139 101 15915 0.8574283187322835 0.6917219377776233 [Unigene_42508, Unigene_11114, Unigene_2622, Unigene_1965, Unigene_36828] 1.5862423896547244 82 | 00071 Fatty acid degradation 6 1139 121 15915 0.8724033602326803 0.6928652798235366 [Unigene_45388, Unigene_2289, Unigene_36658, Unigene_64, Unigene_16976, Unigene_45387] 1.5940209544992183 83 | 00760 Nicotinate and nicotinamide metabolism 3 1139 68 15915 0.8737214311199534 0.6164463151371172 [Unigene_24560, Unigene_44031, Unigene_35352] 1.5769606317774767 84 | 00062 Fatty acid elongation 3 1139 70 15915 0.8858670910355482 0.5988335632760566 [Unigene_32531, Unigene_26960, Unigene_18584] 1.5796184273886884 85 | 00340 Histidine metabolism 3 1139 71 15915 0.891539858798941 0.5903992877369573 [Unigene_45388, Unigene_64, Unigene_45387] 1.5708083226457532 86 | 00740 Riboflavin metabolism 1 1139 30 15915 0.8924548123827153 0.46575943810359965 [Unigene_44803] 1.553921320384022 87 | 00670 One carbon pool by folate 2 1139 52 15915 0.8950173751997076 0.5374147362733842 [Unigene_10100, Unigene_1026] 1.5402624596460084 88 | 01040 Biosynthesis of unsaturated fatty acids 3 1139 72 15915 0.8969585331261155 0.5821992976294995 [Unigene_32531, Unigene_1105, Unigene_44394] 1.5258604931340813 89 | 00510 N-Glycan biosynthesis 5 1139 109 15915 0.8979105507185048 0.6409533551884399 [Unigene_40611, Unigene_28466, Unigene_19293, Unigene_29743, Unigene_35496] 1.5101222898447582 90 | 00790 Folate biosynthesis 1 1139 31 15915 0.9001661103805805 0.4507349401002577 [Unigene_39317] 1.49690544198119 91 | 00052 Galactose metabolism 9 1139 181 15915 0.9077599690863382 0.6947792723092371 [Unigene_17074, Unigene_455, Unigene_23999, Unigene_45514, Unigene_30438, Unigene_35904, Unigene_3152, Unigene_27200, Unigene_24000] 1.4927608380530895 92 | 03018 RNA degradation 27 1139 471 15915 0.9079784823652375 0.8009875687131969 [Unigene_47655, Unigene_43592, Unigene_45713, Unigene_45714, Unigene_28535, Unigene_31529, Unigene_3908, Unigene_11888, Unigene_11889, Unigene_37633, Unigene_31532, Unigene_30060, Unigene_10250, Unigene_17074, Unigene_20589, Unigene_3163, Unigene_5662, Unigene_44010, Unigene_7067, Unigene_539, Unigene_35919, Unigene_30154, Unigene_49086, Unigene_11890, Unigene_540, Unigene_11891, Unigene_18287] 1.4767122570335731 93 | 04144 Endocytosis 53 1139 876 15915 0.9179605345131284 0.8453852814894102 [Unigene_21443, Unigene_44520, Unigene_5433, Unigene_28514, Unigene_26338, Unigene_41699, Unigene_1192, Unigene_14949, Unigene_7851, Unigene_26650, Unigene_28032, Unigene_15964, Unigene_39335, Unigene_17101, Unigene_18186, Unigene_26649, Unigene_23653, Unigene_23652, Unigene_18183, Unigene_3941, Unigene_18182, Unigene_36905, Unigene_3022, Unigene_3021, Unigene_18902, Unigene_34098, Unigene_15397, Unigene_15063, Unigene_24215, Unigene_2222, Unigene_24214, Unigene_7512, Unigene_1851, Unigene_1257, Unigene_44469, Unigene_20851, Unigene_8164, Unigene_24014, Unigene_29266, Unigene_23681, Unigene_36843, Unigene_12118, Unigene_39719, Unigene_832, Unigene_13920, Unigene_33371, Unigene_33370, Unigene_18179, Unigene_44470, Unigene_387, Unigene_2747, Unigene_39320, Unigene_26939] 1.476719120738511 94 | 00604 Glycosphingolipid biosynthesis - ganglio series 2 1139 58 15915 0.9266400569590583 0.4818201083830341 [Unigene_30438, Unigene_35904] 1.4746529938703294 95 | 04140 Regulation of autophagy 9 1139 188 15915 0.9280013660334107 0.6689098313189996 [Unigene_47017, Unigene_34993, Unigene_10123, Unigene_47018, Unigene_10122, Unigene_18305, Unigene_42546, Unigene_42545, Unigene_31390] 1.4611085337547318 96 | 03020 RNA polymerase 5 1139 120 15915 0.9371067228876276 0.5821992976294996 [Unigene_15408, Unigene_18890, Unigene_18889, Unigene_36130, Unigene_5906] 1.4599136314459884 97 | 00310 Lysine degradation 4 1139 102 15915 0.9399223711132573 0.547952280121882 [Unigene_45388, Unigene_7349, Unigene_64, Unigene_45387] 1.449046988799605 98 | Folding, sorting and degradation 125 1139 1989 15915 0.9533760020713661 0.8781286540414774 [Unigene_46665, Unigene_5433, Unigene_24515, Unigene_40961, Unigene_26650, Unigene_35890, Unigene_2835, Unigene_18186, Unigene_26649, Unigene_3267, Unigene_18183, Unigene_18182, Unigene_2611, Unigene_36905, Unigene_48211, Unigene_44010, Unigene_3022, Unigene_7067, Unigene_3021, Unigene_31865, Unigene_16289, Unigene_15352, Unigene_30096, Unigene_30097, Unigene_24656, Unigene_44982, Unigene_42042, Unigene_19226, Unigene_44469, Unigene_45713, Unigene_45714, Unigene_9450, Unigene_24014, Unigene_29266, Unigene_23681, Unigene_3908, Unigene_27361, Unigene_31036, Unigene_38189, Unigene_21417, Unigene_30060, Unigene_10250, Unigene_1186, Unigene_1586, Unigene_45722, Unigene_2313, Unigene_40035, Unigene_30901, Unigene_44470, Unigene_11967, Unigene_5662, Unigene_539, Unigene_35919, Unigene_18803, Unigene_49086, Unigene_540, Unigene_18765, Unigene_12024, Unigene_24518, Unigene_1616, Unigene_43592, Unigene_27707, Unigene_27706, Unigene_26338, Unigene_3290, Unigene_49055, Unigene_31529, Unigene_11888, Unigene_15208, Unigene_28593, Unigene_11889, Unigene_37633, Unigene_15209, Unigene_31532, Unigene_1547, Unigene_36143, Unigene_24705, Unigene_35970, Unigene_17220, Unigene_25515, Unigene_25516, Unigene_24704, Unigene_20589, Unigene_9044, Unigene_6451, Unigene_7145, Unigene_32359, Unigene_18786, Unigene_18784, Unigene_15397, Unigene_17178, Unigene_37762, Unigene_47655, Unigene_24215, Unigene_24214, Unigene_31866, Unigene_28535, Unigene_1491, Unigene_35159, Unigene_39636, Unigene_40611, Unigene_1920, Unigene_18976, Unigene_18854, Unigene_16677, Unigene_18179, Unigene_46731, Unigene_46733, Unigene_17074, Unigene_46732, Unigene_46734, Unigene_45361, Unigene_3163, Unigene_30154, Unigene_30672, Unigene_30673, Unigene_30674, Unigene_7480, Unigene_40108, Unigene_11890, Unigene_11891, Unigene_2747, Unigene_32451, Unigene_38157, Unigene_18287] 1.4546355495521874 99 | 00630 Glyoxylate and dicarboxylate metabolism 9 1139 204 15915 0.9604215374336537 0.6164463151371172 [Unigene_3354, Unigene_1275, Unigene_39943, Unigene_1026, Unigene_2413, Unigene_11114, Unigene_3139, Unigene_27933, Unigene_17099] 1.4504325259202118 100 | 00051 Fructose and mannose metabolism 7 1139 168 15915 0.9609145489174274 0.5821992976294996 [Unigene_44079, Unigene_2210, Unigene_21103, Unigene_17074, Unigene_14847, Unigene_27746, Unigene_3152] 1.43651871959373 101 | 00130 Ubiquinone and other terpenoid-quinone biosynthesis 4 1139 111 15915 0.9616725380654776 0.5035237168687564 [Unigene_12568, Unigene_30982, Unigene_9258, Unigene_42909] 1.4232753563369067 102 | 00330 Arginine and proline metabolism 7 1139 169 15915 0.962536019684319 0.5787543313713368 [Unigene_45388, Unigene_47139, Unigene_64, Unigene_10309, Unigene_47140, Unigene_39545, Unigene_45387] 1.4104488209235566 103 | 00450 Selenocompound metabolism 2 1139 73 15915 0.9709362442561856 0.3828159765235066 [Unigene_2894, Unigene_8864] 1.4088094524501518 104 | 00196 Photosynthesis - antenna proteins 2 1139 74 15915 0.9727102920016921 0.3776427876515673 [Unigene_11433, Unigene_12804] 1.3976808079247613 105 | 00230 Purine metabolism 22 1139 438 15915 0.9728615554598333 0.7018292902930954 [Unigene_7645, Unigene_18890, Unigene_2442, Unigene_7644, Unigene_6649, Unigene_25001, Unigene_27972, Unigene_42578, Unigene_33915, Unigene_24161, Unigene_44031, Unigene_46089, Unigene_25000, Unigene_15408, Unigene_34537, Unigene_12587, Unigene_18889, Unigene_18415, Unigene_18413, Unigene_36130, Unigene_39584, Unigene_5906] 1.3844568289236088 106 | 03040 Spliceosome 39 1139 714 15915 0.9730218373000301 0.7632192473126213 [Unigene_24215, Unigene_24214, Unigene_5433, Unigene_3556, Unigene_44469, Unigene_26338, Unigene_41776, Unigene_24014, Unigene_25184, Unigene_45177, Unigene_29266, Unigene_26650, Unigene_23681, Unigene_24352, Unigene_32466, Unigene_15127, Unigene_38087, Unigene_18179, Unigene_3387, Unigene_47963, Unigene_18186, Unigene_26649, Unigene_3388, Unigene_47964, Unigene_3003, Unigene_18183, Unigene_18182, Unigene_26107, Unigene_2578, Unigene_29338, Unigene_48330, Unigene_44470, Unigene_36905, Unigene_3022, Unigene_3021, Unigene_38458, Unigene_41338, Unigene_2747, Unigene_15397] 1.3714974468609948 107 | 00770 Pantothenate and CoA biosynthesis 3 1139 100 15915 0.9775861911162839 0.4191834942932397 [Unigene_2398, Unigene_48462, Unigene_44031] 1.364931663068019 108 | 00563 Glycosylphosphatidylinositol(GPI)-anchor biosynthesis 1 1139 52 15915 0.9790965998649912 0.2687073681366921 [Unigene_28445] 1.3542644558880252 109 | 00290 Valine, leucine and isoleucine biosynthesis 2 1139 79 15915 0.980122255255521 0.35374134539513896 [Unigene_2398, Unigene_48462] 1.343130497942751 110 | 04146 Peroxisome 12 1139 276 15915 0.9802751097842841 0.6075123105699126 [Unigene_3354, Unigene_47995, Unigene_1275, Unigene_37820, Unigene_39943, Unigene_33688, Unigene_2413, Unigene_3139, Unigene_27933, Unigene_16976, Unigene_42578, Unigene_12750] 1.3310157453951748 111 | 00620 Pyruvate metabolism 12 1139 276 15915 0.9802751097842841 0.6075123105699126 [Unigene_45388, Unigene_27748, Unigene_7137, Unigene_64, Unigene_35669, Unigene_18415, Unigene_47272, Unigene_18413, Unigene_11320, Unigene_42487, Unigene_42486, Unigene_45387] 1.3310157453951748 112 | 03430 Mismatch repair 14 1139 321 15915 0.986005310529979 0.6094048722850837 [Unigene_39260, Unigene_25748, Unigene_44412, Unigene_4028, Unigene_3863, Unigene_29403, Unigene_26675, Unigene_42220, Unigene_32101, Unigene_34125, Unigene_36854, Unigene_39712, Unigene_10586, Unigene_1823] 1.3146737473733052 113 | 01210 2-Oxocarboxylic acid metabolism 9 1139 230 15915 0.9862408911253497 0.5467610795129214 [Unigene_34973, Unigene_2398, Unigene_37166, Unigene_22716, Unigene_48462, Unigene_9928, Unigene_43057, Unigene_43056, Unigene_17099] 1.3032468918442122 114 | 03440 Homologous recombination 16 1139 358 15915 0.9867753424152959 0.6244819281835973 [Unigene_39260, Unigene_25748, Unigene_44412, Unigene_4028, Unigene_3863, Unigene_29403, Unigene_26675, Unigene_41498, Unigene_42220, Unigene_32101, Unigene_34125, Unigene_36854, Unigene_39712, Unigene_10586, Unigene_42932, Unigene_1823] 1.2924137228094141 115 | 00250 Alanine, aspartate and glutamate metabolism 5 1139 156 15915 0.9890411696019494 0.4478456135611535 [Unigene_11114, Unigene_8038, Unigene_1360, Unigene_2927, Unigene_17099] 1.2840183605358642 116 | 00710 Carbon fixation in photosynthetic organisms 9 1139 238 15915 0.9902425336659225 0.5283825558318148 [Unigene_4223, Unigene_44079, Unigene_12080, Unigene_27748, Unigene_7137, Unigene_11653, Unigene_27746, Unigene_47272, Unigene_17099] 1.2743990868048394 117 | 00280 Valine, leucine and isoleucine degradation 4 1139 142 15915 0.9926703982356907 0.39359952515797153 [Unigene_45388, Unigene_64, Unigene_48462, Unigene_45387] 1.2665105080938122 118 | 00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3 1139 120 15915 0.9930419148942361 0.34931957857769974 [Unigene_30982, Unigene_37393, Unigene_9155] 1.2561555846525378 119 | 00270 Cysteine and methionine metabolism 11 1139 289 15915 0.9943758601009638 0.5318360365888855 [Unigene_34973, Unigene_41020, Unigene_2894, Unigene_810, Unigene_30982, Unigene_12199, Unigene_5075, Unigene_24381, Unigene_48462, Unigene_40586, Unigene_41021] 1.2471832821605309 120 | 03420 Nucleotide excision repair 21 1139 473 15915 0.9948301393293525 0.6203561226327015 [Unigene_39260, Unigene_25748, Unigene_44412, Unigene_24704, Unigene_4028, Unigene_3863, Unigene_29403, Unigene_24493, Unigene_26675, Unigene_9450, Unigene_42220, Unigene_36744, Unigene_32101, Unigene_34125, Unigene_36854, Unigene_39712, Unigene_40427, Unigene_10586, Unigene_1823, Unigene_18765, Unigene_24705] 1.2372677363087745 121 | 03013 RNA transport 37 1139 748 15915 0.9951870605447237 0.6911670806082829 [Unigene_16096, Unigene_43592, Unigene_2487, Unigene_27660, Unigene_8884, Unigene_49070, Unigene_558, Unigene_49170, Unigene_11888, Unigene_11889, Unigene_23180, Unigene_794, Unigene_751, Unigene_35054, Unigene_17126, Unigene_1648, Unigene_10250, Unigene_41482, Unigene_8877, Unigene_8876, Unigene_1300, Unigene_25514, Unigene_2290, Unigene_3163, Unigene_8499, Unigene_3360, Unigene_539, Unigene_49169, Unigene_14801, Unigene_41913, Unigene_39108, Unigene_12346, Unigene_343, Unigene_344, Unigene_11890, Unigene_540, Unigene_11891] 1.227397374671826 122 | 00195 Photosynthesis 4 1139 150 15915 0.9953195065194361 0.37260755048287975 [Unigene_33697, Unigene_16237, Unigene_23143, Unigene_20728] 1.2174155947510459 123 | 03030 DNA replication 14 1139 354 15915 0.9960533736707053 0.5525959435127454 [Unigene_39260, Unigene_25748, Unigene_44412, Unigene_4028, Unigene_3863, Unigene_29403, Unigene_26675, Unigene_42220, Unigene_32101, Unigene_34125, Unigene_36854, Unigene_39712, Unigene_10586, Unigene_1823] 1.2083270434693802 124 | Metabolism of cofactors and vitamins 30 1139 638 15915 0.9961873611214627 0.6570274205223193 [Unigene_4783, Unigene_46028, Unigene_26734, Unigene_2127, Unigene_3194, Unigene_47253, Unigene_48462, Unigene_47252, Unigene_9258, Unigene_9731, Unigene_33533, Unigene_31454, Unigene_30982, Unigene_39317, Unigene_16039, Unigene_1901, Unigene_35352, Unigene_2398, Unigene_43360, Unigene_49503, Unigene_2379, Unigene_1026, Unigene_1467, Unigene_24560, Unigene_28103, Unigene_44031, Unigene_12568, Unigene_10100, Unigene_44803, Unigene_42909] 1.1986644670404591 125 | 03022 Basal transcription factors 4 1139 159 15915 0.997198626540207 0.3515165570593205 [Unigene_36744, Unigene_29083, Unigene_40427, Unigene_24493] 1.1902048123221827 126 | 00220 Arginine biosynthesis 2 1139 111 15915 0.9975420529134208 0.2517618584343782 [Unigene_11114, Unigene_17099] 1.1810897906494902 127 | 00640 Propanoate metabolism 1 1139 81 15915 0.9975960243521561 0.1725034955939258 [Unigene_35669] 1.1717794571755484 128 | 01212 Fatty acid metabolism 4 1139 168 15915 0.9983373269780875 0.3326853129311426 [Unigene_32531, Unigene_16976, Unigene_1105, Unigene_44394] 1.163416727502023 129 | Nucleotide metabolism 26 1139 601 15915 0.9986953214172369 0.6044798031960196 [Unigene_18890, Unigene_2442, Unigene_8864, Unigene_6649, Unigene_25001, Unigene_42248, Unigene_30757, Unigene_46089, Unigene_25000, Unigene_15408, Unigene_18415, Unigene_18413, Unigene_5906, Unigene_7645, Unigene_7644, Unigene_27972, Unigene_42578, Unigene_33915, Unigene_24161, Unigene_44031, Unigene_34537, Unigene_12587, Unigene_18889, Unigene_14464, Unigene_36130, Unigene_39584] 1.1547414653886803 130 | 00010 Glycolysis / Gluconeogenesis 11 1139 325 15915 0.9988498199298341 0.47292496792057814 [Unigene_45388, Unigene_44079, Unigene_17074, Unigene_2289, Unigene_36658, Unigene_64, Unigene_27746, Unigene_35669, Unigene_18415, Unigene_18413, Unigene_45387] 1.1459672352683368 131 | 00061 Fatty acid biosynthesis 1 1139 93 15915 0.9990188462230342 0.15024498003341924 [Unigene_16976] 1.1373445326231466 132 | 04145 Phagosome 14 1139 389 15915 0.9990803991381102 0.5028765141478454 [Unigene_3004, Unigene_2334, Unigene_3005, Unigene_2335, Unigene_9044, Unigene_40035, Unigene_9500, Unigene_28593, Unigene_30453, Unigene_17655, Unigene_4813, Unigene_1449, Unigene_1637, Unigene_34144] 1.128732053988094 133 | 00970 Aminoacyl-tRNA biosynthesis 5 1139 202 15915 0.9990910012650063 0.3458609688888116 [Unigene_16118, Unigene_8056, Unigene_34470, Unigene_19828, Unigene_25220] 1.1201929408122797 134 | Transcription 48 1139 993 15915 0.999175200790578 0.6754215416608091 [Unigene_24215, Unigene_18890, Unigene_24214, Unigene_5433, Unigene_3556, Unigene_44469, Unigene_26338, Unigene_41776, Unigene_24493, Unigene_24014, Unigene_25184, Unigene_45177, Unigene_29266, Unigene_26650, Unigene_23681, Unigene_24352, Unigene_36744, Unigene_15408, Unigene_32466, Unigene_29083, Unigene_15127, Unigene_38087, Unigene_18179, Unigene_5906, Unigene_3387, Unigene_47963, Unigene_18186, Unigene_26649, Unigene_3388, Unigene_47964, Unigene_3003, Unigene_18183, Unigene_18182, Unigene_26107, Unigene_2578, Unigene_29338, Unigene_48330, Unigene_44470, Unigene_36905, Unigene_3022, Unigene_3021, Unigene_38458, Unigene_40427, Unigene_41338, Unigene_18889, Unigene_2747, Unigene_36130, Unigene_15397] 1.111864133210568 135 | 00240 Pyrimidine metabolism 14 1139 393 15915 0.9992266312366188 0.4977581781259844 [Unigene_7645, Unigene_18890, Unigene_2442, Unigene_7644, Unigene_8864, Unigene_42248, Unigene_30757, Unigene_15408, Unigene_12587, Unigene_18889, Unigene_14464, Unigene_36130, Unigene_39584, Unigene_5906] 1.10362344345537 136 | 03410 Base excision repair 2 1139 138 15915 0.9996027227906313 0.20250410352330422 [Unigene_21197, Unigene_4132] 1.0958607627630625 137 | Cellular Processes 88 1139 1705 15915 0.9998226330122695 0.7211759041604123 [Unigene_21443, Unigene_47995, Unigene_1275, Unigene_44520, Unigene_5433, Unigene_28514, Unigene_26338, Unigene_3139, Unigene_42546, Unigene_41699, Unigene_42545, Unigene_1192, Unigene_14949, Unigene_7851, Unigene_26650, Unigene_28032, Unigene_28593, Unigene_15964, Unigene_16976, Unigene_39335, Unigene_4813, Unigene_17101, Unigene_18186, Unigene_26649, Unigene_23653, Unigene_23652, Unigene_2334, Unigene_18183, Unigene_3941, Unigene_2335, Unigene_18182, Unigene_2413, Unigene_27933, Unigene_9044, Unigene_36905, Unigene_3022, Unigene_3021, Unigene_30453, Unigene_39943, Unigene_33688, Unigene_18902, Unigene_18305, Unigene_17655, Unigene_1637, Unigene_34098, Unigene_15397, Unigene_3354, Unigene_47017, Unigene_15063, Unigene_24215, Unigene_2222, Unigene_24214, Unigene_7512, Unigene_47018, Unigene_1851, Unigene_1257, Unigene_44469, Unigene_20851, Unigene_8164, Unigene_24014, Unigene_29266, Unigene_23681, Unigene_36843, Unigene_12118, Unigene_39719, Unigene_832, Unigene_13920, Unigene_33371, Unigene_31390, Unigene_1449, Unigene_12750, Unigene_33370, Unigene_18179, Unigene_34144, Unigene_3004, Unigene_3005, Unigene_42578, Unigene_40035, Unigene_44470, Unigene_9500, Unigene_34993, Unigene_10123, Unigene_37820, Unigene_10122, Unigene_387, Unigene_2747, Unigene_39320, Unigene_26939] 1.0880422771015874 138 | Transport and catabolism 88 1139 1705 15915 0.9998226330122695 0.7211759041604123 [Unigene_21443, Unigene_47995, Unigene_1275, Unigene_44520, Unigene_5433, Unigene_28514, Unigene_26338, Unigene_3139, Unigene_42546, Unigene_41699, Unigene_42545, Unigene_1192, Unigene_14949, Unigene_7851, Unigene_26650, Unigene_28032, Unigene_28593, Unigene_15964, Unigene_16976, Unigene_39335, Unigene_4813, Unigene_17101, Unigene_18186, Unigene_26649, Unigene_23653, Unigene_23652, Unigene_2334, Unigene_18183, Unigene_3941, Unigene_2335, Unigene_18182, Unigene_2413, Unigene_27933, Unigene_9044, Unigene_36905, Unigene_3022, Unigene_3021, Unigene_30453, Unigene_39943, Unigene_33688, Unigene_18902, Unigene_18305, Unigene_17655, Unigene_1637, Unigene_34098, Unigene_15397, Unigene_3354, Unigene_47017, Unigene_15063, Unigene_24215, Unigene_2222, Unigene_24214, Unigene_7512, Unigene_47018, Unigene_1851, Unigene_1257, Unigene_44469, Unigene_20851, Unigene_8164, Unigene_24014, Unigene_29266, Unigene_23681, Unigene_36843, Unigene_12118, Unigene_39719, Unigene_832, Unigene_13920, Unigene_33371, Unigene_31390, Unigene_1449, Unigene_12750, Unigene_33370, Unigene_18179, Unigene_34144, Unigene_3004, Unigene_3005, Unigene_42578, Unigene_40035, Unigene_44470, Unigene_9500, Unigene_34993, Unigene_10123, Unigene_37820, Unigene_10122, Unigene_387, Unigene_2747, Unigene_39320, Unigene_26939] 1.0880422771015874 139 | Amino acid metabolism 55 1139 1173 15915 0.999871547177398 0.6551603349283371 [Unigene_1275, Unigene_2289, Unigene_37393, Unigene_64, Unigene_3139, Unigene_10309, Unigene_9155, Unigene_5075, Unigene_810, Unigene_45388, Unigene_41020, Unigene_7349, Unigene_2894, Unigene_34090, Unigene_2413, Unigene_24381, Unigene_8038, Unigene_1360, Unigene_41021, Unigene_45387, Unigene_34973, Unigene_207, Unigene_39943, Unigene_11114, Unigene_37166, Unigene_39545, Unigene_2927, Unigene_17099, Unigene_18495, Unigene_3354, Unigene_1177, Unigene_47139, Unigene_3073, Unigene_48462, Unigene_40586, Unigene_9258, Unigene_44142, Unigene_33806, Unigene_43057, Unigene_43056, Unigene_38428, Unigene_30982, Unigene_20802, Unigene_12199, Unigene_20647, Unigene_9928, Unigene_11181, Unigene_11182, Unigene_2398, Unigene_1026, Unigene_26068, Unigene_47140, Unigene_36658, Unigene_22859, Unigene_38872] 1.0723260071177891 140 | 00020 Citrate cycle (TCA cycle) 1 1139 137 15915 0.9999635187793726 0.10199111783290504 [Unigene_11690] 1.0647093581247995 141 | Translation 140 1139 2606 15915 0.9999728200397414 0.7506483653242972 [Unigene_3137, Unigene_20676, Unigene_606, Unigene_2041, Unigene_967, Unigene_968, Unigene_453, Unigene_330, Unigene_47006, Unigene_2573, Unigene_2973, Unigene_3148, Unigene_2290, Unigene_3381, Unigene_2050, Unigene_3380, Unigene_2051, Unigene_2294, Unigene_2053, Unigene_326, Unigene_169, Unigene_39108, Unigene_32558, Unigene_17898, Unigene_441, Unigene_1911, Unigene_2144, Unigene_1453, Unigene_1576, Unigene_2665, Unigene_3118, Unigene_1610, Unigene_2546, Unigene_41751, Unigene_8884, Unigene_1690, Unigene_25220, Unigene_49070, Unigene_558, Unigene_38866, Unigene_277, Unigene_794, Unigene_16118, Unigene_2814, Unigene_10250, Unigene_41482, Unigene_1066, Unigene_1341, Unigene_1980, Unigene_16183, Unigene_3124, Unigene_2432, Unigene_45965, Unigene_8499, Unigene_3360, Unigene_539, Unigene_2274, Unigene_41913, Unigene_663, Unigene_17437, Unigene_2547, Unigene_540, Unigene_2945, Unigene_16096, Unigene_40084, Unigene_40085, Unigene_43592, Unigene_1793, Unigene_2245, Unigene_2487, Unigene_40083, Unigene_1158, Unigene_3338, Unigene_20477, Unigene_1435, Unigene_27660, Unigene_49170, Unigene_11888, Unigene_35334, Unigene_11889, Unigene_13307, Unigene_23180, Unigene_35054, Unigene_3449, Unigene_38840, Unigene_8877, Unigene_8876, Unigene_36, Unigene_1289, Unigene_1202, Unigene_24428, Unigene_25514, Unigene_519, Unigene_2097, Unigene_2098, Unigene_49181, Unigene_884, Unigene_401, Unigene_3339, Unigene_3035, Unigene_25945, Unigene_21349, Unigene_3313, Unigene_1378, Unigene_2467, Unigene_2180, Unigene_2061, Unigene_19828, Unigene_2062, Unigene_21341, Unigene_2186, Unigene_757, Unigene_357, Unigene_751, Unigene_870, Unigene_17126, Unigene_1406, Unigene_1648, Unigene_1925, Unigene_2111, Unigene_3168, Unigene_1300, Unigene_3448, Unigene_22260, Unigene_8056, Unigene_23596, Unigene_3163, Unigene_49445, Unigene_49169, Unigene_867, Unigene_14801, Unigene_38839, Unigene_12346, Unigene_343, Unigene_31920, Unigene_344, Unigene_11890, Unigene_11891, Unigene_34470, Unigene_39645] 1.0571141240420125 142 | 01200 Carbon metabolism 26 1139 730 15915 0.999991349622208 0.4976607694805585 [Unigene_4223, Unigene_3354, Unigene_1275, Unigene_27748, Unigene_7137, Unigene_2289, Unigene_3139, Unigene_27746, Unigene_47272, Unigene_712, Unigene_18415, Unigene_18413, Unigene_44079, Unigene_12080, Unigene_17074, Unigene_1222, Unigene_1026, Unigene_2413, Unigene_27933, Unigene_1080, Unigene_24381, Unigene_39943, Unigene_36658, Unigene_11653, Unigene_35669, Unigene_17099] 1.0496363102417503 143 | Replication and repair 25 1139 711 15915 0.999991453310136 0.49130742415991524 [Unigene_25748, Unigene_4028, Unigene_29403, Unigene_24493, Unigene_26675, Unigene_41498, Unigene_9450, Unigene_42220, Unigene_36744, Unigene_32101, Unigene_34125, Unigene_39712, Unigene_42932, Unigene_1823, Unigene_24705, Unigene_39260, Unigene_44412, Unigene_24704, Unigene_3863, Unigene_21197, Unigene_4132, Unigene_36854, Unigene_40427, Unigene_10586, Unigene_18765] 1.0422446133091559 144 | 03050 Proteasome 2 1139 202 15915 0.99999535047126 0.13834438755552467 [Unigene_42042, Unigene_16289] 1.0349602228653598 145 | 03015 mRNA surveillance pathway 14 1139 508 15915 0.9999967042337404 0.38507670079431466 [Unigene_47006, Unigene_43592, Unigene_1980, Unigene_22260, Unigene_41751, Unigene_23596, Unigene_3163, Unigene_539, Unigene_11888, Unigene_11889, Unigene_11890, Unigene_540, Unigene_11891, Unigene_10250] 1.0277743904624554 146 | 01230 Biosynthesis of amino acids 23 1139 696 15915 0.9999970541502141 0.461744270533741 [Unigene_4223, Unigene_44079, Unigene_12080, Unigene_2398, Unigene_17074, Unigene_2894, Unigene_37393, Unigene_1026, Unigene_9155, Unigene_24381, Unigene_48462, Unigene_33806, Unigene_712, Unigene_34973, Unigene_207, Unigene_810, Unigene_30982, Unigene_11114, Unigene_11653, Unigene_18415, Unigene_22859, Unigene_18413, Unigene_17099] 1.0206866483740116 147 | 03008 Ribosome biogenesis in eukaryotes 3 1139 297 15915 0.9999999369686002 0.14113922366775747 [Unigene_41913, Unigene_751, Unigene_17437] 1.0136985662421427 148 | Overview 47 1139 1291 15915 0.9999999906875434 0.508691562917177 [Unigene_4223, Unigene_3354, Unigene_1275, Unigene_27748, Unigene_7137, Unigene_2289, Unigene_37393, Unigene_3139, Unigene_27746, Unigene_47272, Unigene_9155, Unigene_48462, Unigene_33806, Unigene_43057, Unigene_43056, Unigene_712, Unigene_810, Unigene_30982, Unigene_16976, Unigene_18415, Unigene_18413, Unigene_9928, Unigene_44079, Unigene_12080, Unigene_2398, Unigene_17074, Unigene_2894, Unigene_1222, Unigene_1026, Unigene_2413, Unigene_27933, Unigene_1105, Unigene_1080, Unigene_24381, Unigene_44394, Unigene_34973, Unigene_207, Unigene_32531, Unigene_39943, Unigene_11114, Unigene_36658, Unigene_11653, Unigene_35669, Unigene_37166, Unigene_22859, Unigene_22716, Unigene_17099] 1.0068027117126288 149 | Genetic Information Processing 302 1139 5862 15915 0.999999999999993 0.7198533792594018 [Unigene_46665, Unigene_24515, Unigene_29403, Unigene_41776, Unigene_606, Unigene_967, Unigene_968, Unigene_36744, Unigene_29083, Unigene_15127, Unigene_35890, Unigene_18186, Unigene_2573, Unigene_18183, Unigene_18182, Unigene_2578, Unigene_44010, Unigene_169, Unigene_39108, Unigene_10586, Unigene_31865, Unigene_17898, Unigene_1911, Unigene_15352, Unigene_30096, Unigene_30097, Unigene_24656, Unigene_42042, Unigene_18890, Unigene_25748, Unigene_1453, Unigene_1576, Unigene_44469, Unigene_2665, Unigene_2546, Unigene_41751, Unigene_25184, Unigene_8884, Unigene_1690, Unigene_23681, Unigene_27361, Unigene_31036, Unigene_277, Unigene_16118, Unigene_30060, Unigene_10250, Unigene_1341, Unigene_2432, Unigene_1586, Unigene_2313, Unigene_44470, Unigene_36854, Unigene_40427, Unigene_18889, Unigene_17437, Unigene_2547, Unigene_18765, Unigene_24518, Unigene_16096, Unigene_40084, Unigene_40085, Unigene_43592, Unigene_2245, Unigene_2487, Unigene_40083, Unigene_1158, Unigene_26338, Unigene_3338, Unigene_20477, Unigene_27660, Unigene_32101, Unigene_32466, Unigene_11888, Unigene_15208, Unigene_11889, Unigene_15209, Unigene_23180, Unigene_42932, Unigene_36143, Unigene_35054, Unigene_3449, Unigene_1823, Unigene_24705, Unigene_35970, Unigene_47963, Unigene_36, Unigene_47964, Unigene_24704, Unigene_20589, Unigene_1289, Unigene_519, Unigene_7145, Unigene_38458, Unigene_884, Unigene_401, Unigene_32359, Unigene_3339, Unigene_17178, Unigene_25945, Unigene_3556, Unigene_21349, Unigene_3313, Unigene_1378, Unigene_2467, Unigene_28535, Unigene_19828, Unigene_21341, Unigene_1491, Unigene_757, Unigene_35159, Unigene_39636, Unigene_40611, Unigene_751, Unigene_1920, Unigene_18976, Unigene_870, Unigene_18854, Unigene_16677, Unigene_18179, Unigene_1925, Unigene_46731, Unigene_2111, Unigene_46733, Unigene_17074, Unigene_46732, Unigene_46734, Unigene_26107, Unigene_3448, Unigene_49445, Unigene_867, Unigene_14801, Unigene_30154, Unigene_7480, Unigene_31920, Unigene_11890, Unigene_11891, Unigene_39645, Unigene_36130, Unigene_32451, Unigene_18287, Unigene_5433, Unigene_3137, Unigene_20676, Unigene_40961, Unigene_41498, Unigene_2041, Unigene_45177, Unigene_26650, Unigene_24352, Unigene_42220, Unigene_15408, Unigene_453, Unigene_330, Unigene_2835, Unigene_38087, Unigene_47006, Unigene_3387, Unigene_26649, Unigene_3388, Unigene_44412, Unigene_3267, Unigene_2973, Unigene_3148, Unigene_2611, Unigene_2290, Unigene_3381, Unigene_48330, Unigene_36905, Unigene_2050, Unigene_3380, Unigene_21197, Unigene_2051, Unigene_2294, Unigene_48211, Unigene_3022, Unigene_7067, Unigene_2053, Unigene_3021, Unigene_326, Unigene_32558, Unigene_441, Unigene_16289, Unigene_44982, Unigene_2144, Unigene_19226, Unigene_3118, Unigene_45713, Unigene_1610, Unigene_45714, Unigene_24493, Unigene_26675, Unigene_9450, Unigene_24014, Unigene_29266, Unigene_25220, Unigene_49070, Unigene_558, Unigene_3908, Unigene_38866, Unigene_39712, Unigene_794, Unigene_38189, Unigene_21417, Unigene_2814, Unigene_1186, Unigene_41482, Unigene_1066, Unigene_1980, Unigene_16183, Unigene_3003, Unigene_3124, Unigene_45722, Unigene_45965, Unigene_40035, Unigene_30901, Unigene_11967, Unigene_5662, Unigene_8499, Unigene_3360, Unigene_539, Unigene_2274, Unigene_35919, Unigene_41913, Unigene_18803, Unigene_49086, Unigene_663, Unigene_540, Unigene_2945, Unigene_12024, Unigene_1616, Unigene_1793, Unigene_27707, Unigene_27706, Unigene_4028, Unigene_1435, Unigene_3290, Unigene_49055, Unigene_31529, Unigene_34125, Unigene_49170, Unigene_35334, Unigene_28593, Unigene_37633, Unigene_13307, Unigene_31532, Unigene_1547, Unigene_5906, Unigene_38840, Unigene_17220, Unigene_25515, Unigene_39260, Unigene_25516, Unigene_8877, Unigene_8876, Unigene_3863, Unigene_1202, Unigene_24428, Unigene_25514, Unigene_9044, Unigene_2097, Unigene_6451, Unigene_2098, Unigene_49181, Unigene_41338, Unigene_18786, Unigene_18784, Unigene_15397, Unigene_37762, Unigene_47655, Unigene_3035, Unigene_24215, Unigene_24214, Unigene_31866, Unigene_2180, Unigene_2061, Unigene_2062, Unigene_2186, Unigene_357, Unigene_17126, Unigene_1406, Unigene_1648, Unigene_3168, Unigene_1300, Unigene_22260, Unigene_8056, Unigene_29338, Unigene_45361, Unigene_23596, Unigene_3163, Unigene_4132, Unigene_49169, Unigene_30672, Unigene_30673, Unigene_38839, Unigene_30674, Unigene_40108, Unigene_12346, Unigene_343, Unigene_344, Unigene_2747, Unigene_34470, Unigene_38157] 0.9999999999999931 150 | -------------------------------------------------------------------------------- /inst/TBploter/data/TBtools.level2.counts.table.xls: -------------------------------------------------------------------------------- 1 | GOid Description Class Counts TotalGOid TotalGeneAnnotated 2 | GO:0007610 behavior biological_process 10 11720 56756 3 | GO:0022610 biological adhesion biological_process 244 11720 56756 4 | GO:0065007 biological regulation biological_process 14388 11720 56756 5 | GO:0098743 cell aggregation biological_process 1 11720 56756 6 | GO:0001906 cell killing biological_process 43 11720 56756 7 | GO:0071840 cellular component organization or biogenesis biological_process 8661 11720 56756 8 | GO:0009987 cellular process biological_process 35940 11720 56756 9 | GO:0098754 detoxification biological_process 80 11720 56756 10 | GO:0032502 developmental process biological_process 6054 11720 56756 11 | GO:0040007 growth biological_process 1492 11720 56756 12 | GO:0002376 immune system process biological_process 1475 11720 56756 13 | GO:0051179 localization biological_process 9461 11720 56756 14 | GO:0040011 locomotion biological_process 126 11720 56756 15 | GO:0008152 metabolic process biological_process 38022 11720 56756 16 | GO:0051704 multi-organism process biological_process 3027 11720 56756 17 | GO:0032501 multicellular organismal process biological_process 5776 11720 56756 18 | GO:0099531 presynaptic process involved in chemical synaptic transmission biological_process 1 11720 56756 19 | GO:0050789 regulation of biological process biological_process 12952 11720 56756 20 | GO:0000003 reproduction biological_process 3319 11720 56756 21 | GO:0022414 reproductive process biological_process 3316 11720 56756 22 | GO:0050896 response to stimulus biological_process 12327 11720 56756 23 | GO:0048511 rhythmic process biological_process 247 11720 56756 24 | GO:0023052 signaling biological_process 4786 11720 56756 25 | GO:0044699 single-organism process biological_process 26090 11720 56756 26 | GO:0005623 cell cellular_component 28123 11720 56756 27 | GO:0030054 cell junction cellular_component 1954 11720 56756 28 | GO:0044464 cell part cellular_component 27809 11720 56756 29 | GO:0031012 extracellular matrix cellular_component 58 11720 56756 30 | GO:0044420 extracellular matrix component cellular_component 7 11720 56756 31 | GO:0005576 extracellular region cellular_component 1933 11720 56756 32 | GO:0044421 extracellular region part cellular_component 508 11720 56756 33 | GO:0032991 macromolecular complex cellular_component 6726 11720 56756 34 | GO:0016020 membrane cellular_component 14423 11720 56756 35 | GO:0044425 membrane part cellular_component 9210 11720 56756 36 | GO:0031974 membrane-enclosed lumen cellular_component 1746 11720 56756 37 | GO:0009295 nucleoid cellular_component 62 11720 56756 38 | GO:0043226 organelle cellular_component 19894 11720 56756 39 | GO:0044422 organelle part cellular_component 9223 11720 56756 40 | GO:0044215 other organism cellular_component 32 11720 56756 41 | GO:0044217 other organism part cellular_component 32 11720 56756 42 | GO:0099512 supramolecular fiber cellular_component 526 11720 56756 43 | GO:0055044 symplast cellular_component 1807 11720 56756 44 | GO:0045202 synapse cellular_component 13 11720 56756 45 | GO:0044456 synapse part cellular_component 9 11720 56756 46 | GO:0019012 virion cellular_component 105 11720 56756 47 | GO:0044423 virion part cellular_component 100 11720 56756 48 | GO:0016209 antioxidant activity molecular_function 424 11720 56756 49 | GO:0005488 binding molecular_function 31112 11720 56756 50 | GO:0003824 catalytic activity molecular_function 25741 11720 56756 51 | GO:0042056 chemoattractant activity molecular_function 3 11720 56756 52 | GO:0009055 electron carrier activity molecular_function 479 11720 56756 53 | GO:0016530 metallochaperone activity molecular_function 13 11720 56756 54 | GO:0098772 molecular function regulator molecular_function 841 11720 56756 55 | GO:0060089 molecular transducer activity molecular_function 565 11720 56756 56 | GO:0001071 nucleic acid binding transcription factor activity molecular_function 2797 11720 56756 57 | GO:0045735 nutrient reservoir activity molecular_function 67 11720 56756 58 | GO:0031386 protein tag molecular_function 17 11720 56756 59 | GO:0004871 signal transducer activity molecular_function 766 11720 56756 60 | GO:0005198 structural molecule activity molecular_function 1902 11720 56756 61 | GO:0000988 transcription factor activity, protein binding molecular_function 328 11720 56756 62 | GO:0045182 translation regulator activity molecular_function 5 11720 56756 63 | GO:0005215 transporter activity molecular_function 3470 11720 56756 64 | -------------------------------------------------------------------------------- /inst/TBploter/extraWedget.R: -------------------------------------------------------------------------------- 1 | 2 | library(shinyBS) 3 | library(shiny) 4 | 5 | NiePrettyDownloadButton<-function(inputID,addclass="",inputstring=""){ 6 | classstr= paste("btn shiny-download-link",addclass,sep=" ") 7 | tags$a(id=inputID, 8 | class=classstr, 9 | href="", 10 | target="_blank", 11 | tags$i(class="glyphicon glyphicon-save"), 12 | inputstring 13 | ) 14 | } 15 | NiePrettyActionButton<-function(inputID,addclass="",inputstring=""){ 16 | classstr= paste("btn action-button",addclass,sep=" ") 17 | tags$a(id=inputID, 18 | class=classstr, 19 | href="", 20 | target="_blank", 21 | tags$i(class="fa fa-download"), 22 | inputstring 23 | ) 24 | } 25 | 26 | DiaoTips<-function(number,title="",myplacement="right"){ 27 | tipsid=paste("tipid",number,sep="_") 28 | tagList( 29 | tags$span(id=tipsid,class="glyphicon glyphicon-question-sign"), 30 | bsTooltip(tipsid, title, trigger="hover", placement=myplacement) 31 | ) 32 | } 33 | Diaopopover<-function(number,title="",myplacement="right"){ 34 | tipsid=paste("popid",number,sep="_") 35 | tagList( 36 | tags$span(id=tipsid,class="glyphicon glyphicon-question-sign"), 37 | bsTooltip(tipsid, title, trigger="hover", placement=myplacement) 38 | ) 39 | } 40 | #draggable panel which is not conflicted with shinyBS tooltips 41 | absoluteP2<-function (..., top = NULL, left = NULL, right = NULL, bottom = NULL, 42 | width = NULL, height = NULL, draggable = FALSE, fixed = FALSE, 43 | cursor = c("auto", "move", "default", "inherit")) 44 | { 45 | cssProps <- list(top = top, left = left, right = right, bottom = bottom, 46 | width = width, height = height) 47 | cssProps <- cssProps[!sapply(cssProps, is.null)] 48 | cssProps <- sapply(cssProps, validateCssUnit) 49 | cssProps[["position"]] <- ifelse(fixed, "fixed", "absolute") 50 | cssProps[["cursor"]] <- match.arg(cursor) 51 | if (identical(cssProps[["cursor"]], "auto")) 52 | cssProps[["cursor"]] <- ifelse(draggable, "move", "inherit") 53 | style <- paste(paste(names(cssProps), cssProps, sep = ":", 54 | collapse = ";"), ";", sep = "") 55 | divTag <- tags$div(style = style, ...) 56 | if (isTRUE(draggable)) { 57 | divTag <- tagAppendAttributes(divTag, class = "draggable") 58 | return(tagList(singleton(tags$head(tags$script(src = "js/jquery-ui.min.js"))), 59 | divTag, tags$script("$(\".draggable\").draggable({containment: \"parent\"});"))) 60 | } 61 | else { 62 | return(divTag) 63 | } 64 | } 65 | 66 | 67 | 68 | newbusyIndicator<-function(){ 69 | tagList( 70 | div(class="zbusy", 71 | p("Loading in progress......"), 72 | tags$img(style="text-align:center",src="shinysky/busyIndicator/ajaxloaderq.gif") 73 | ) 74 | ) 75 | } 76 | 77 | 78 | 79 | -------------------------------------------------------------------------------- /inst/TBploter/server.R: -------------------------------------------------------------------------------- 1 | # Must be executed BEFORE rgl is loaded on headless devices. 2 | options(rgl.useNULL=TRUE) 3 | 4 | library(shiny) 5 | library(ggplot2) 6 | library(ggthemes) 7 | 8 | library(DT) 9 | 10 | 11 | 12 | options(shiny.maxRequestSize=100*1024^2) # max file size is 100Mb 13 | shinyServer(function(input,output,session){ 14 | 15 | 16 | #################### 17 | #GOenrichment plotting functiuon 18 | #################### 19 | datasetInput <- reactive({ 20 | 21 | example<-read.table("data/TBtools.level2.counts.table.xls",header=T,sep="\t") 22 | inFile <- input$file1 23 | if (!is.null(inFile)){ 24 | 25 | data<-read.table(inFile$datapath, header=input$header, sep=input$sep, stringsAsFactors=F) 26 | 27 | } 28 | switch(input$dataset, 29 | "example" = example, 30 | "upload" = data 31 | ) 32 | }) 33 | 34 | 35 | ##enrichment GO data 36 | processedGOdata<-reactive({ 37 | tbtoolsCounts=datasetInput() 38 | if(input$Issorted){ 39 | 40 | tbtoolsCounts<-tbtoolsCounts[order(tbtoolsCounts$Counts,decreasing=F),] 41 | tbtoolsCounts<-tbtoolsCounts[order(tbtoolsCounts$Class,decreasing=T),] 42 | } 43 | tbtoolsCounts 44 | }) 45 | 46 | # output upload dataset or example dataset 47 | output$summaryGO <- DT::renderDataTable(processedGOdata()) 48 | 49 | 50 | ################ 51 | ##plot goanalysis outputfunction 52 | ################ 53 | 54 | GOplotfunction<-function(){ 55 | tbtoolsCounts<-processedGOdata() 56 | tbtoolsCounts$Description<-factor(tbtoolsCounts$Description,unique(as.character(tbtoolsCounts$Description))) 57 | 58 | GeneCount=tbtoolsCounts[2,6] 59 | p<-ggplot(tbtoolsCounts)+ 60 | geom_bar(aes(x=Description,y=Counts/GeneCount*100,fill=Class),stat="identity")+ 61 | geom_text(aes(x=Description,y=(Counts+max(tbtoolsCounts$Counts)*0.06)/GeneCount*100,label=Counts))+ 62 | 63 | coord_flip()+theme_bw()+theme( 64 | legend.position = c(.8, .1), 65 | panel.grid.major=element_blank() , 66 | panel.grid.minor=element_blank() , 67 | panel.background=element_blank() # , 68 | 69 | )+ xlab("GO Decription")+ylab("Percent (%)") 70 | if(input$theme=="Tufte"){ 71 | p=p+ theme_tufte() 72 | }else if(input$theme=="Economist"){ 73 | p=p+ scale_fill_economist() 74 | }else if(input$theme=="Solarized"){ 75 | p=p+ scale_fill_solarized("blue") 76 | }else if(input$theme=="Stata"){ 77 | p=p+ scale_fill_stata() 78 | }else if(input$theme=="Excel 2003"){ 79 | p=p+ scale_fill_excel() 80 | }else if(input$theme=="Inverse Gray"){ 81 | p=p+ theme_igray() 82 | }else if(input$theme=="Fivethirtyeight"){ 83 | p=p+theme_fivethirtyeight() 84 | }else if(input$theme=="Tableau"){ 85 | p=p+ scale_fill_tableau() 86 | }else if(input$theme=="Stephen"){ 87 | p=p+ scale_fill_few() 88 | }else if(input$theme=="Wall Street"){ 89 | p=p+ scale_fill_wsj("colors6", "") 90 | }else if(input$theme=="GDocs"){ 91 | p=p+ scale_color_gdocs() 92 | }else if(input$theme=="Calc"){ 93 | p=p+ scale_color_calc() 94 | }else if(input$theme=="Pander"){ 95 | p=p+ scale_fill_pander() 96 | }else if(input$theme=="Highcharts"){ 97 | p=p+ scale_fill_hc() 98 | } 99 | 100 | 101 | } 102 | 103 | output$GOplotRender<-renderPlot({ 104 | print(GOplotfunction()) 105 | },width = 800,height=800 106 | ) 107 | 108 | 109 | 110 | ################################ 111 | #download plot option 112 | output$downloadDataPNG <- downloadHandler( 113 | filename = function() { 114 | paste("output", Sys.time(), '.png', sep='') 115 | }, 116 | 117 | content = function(file) { 118 | # png(file, type="cairo",units="in",width = 10, height = 10,pointsize=5.2,res=300) 119 | # png(file=file, width = 1800, height = 1800, res = 300) 120 | # print(GOplotfunction()) 121 | ggsave(file, GOplotfunction(),width = 10, height = 10, units = "in",pointsize=5.2) 122 | # dev.off() 123 | }, 124 | contentType = 'image/png' 125 | ) 126 | 127 | 128 | output$downloadDataPDF <- downloadHandler( 129 | filename = function() { 130 | paste("output", Sys.time(), '.pdf', sep='') 131 | }, 132 | 133 | content = function(file) { 134 | # pdf(file) 135 | # print(GOplotfunction()) 136 | ggsave(file, GOplotfunction(),width = 10, height = 10, units = "in",pointsize=5.2) 137 | # dev.off() 138 | }, 139 | contentType = 'image/pdf' 140 | ) 141 | 142 | output$downloadDataEPS <- downloadHandler( 143 | filename = function() { 144 | paste("output", Sys.time(), '.eps', sep='') 145 | }, 146 | 147 | content = function(file) { 148 | setEPS() 149 | # postscript(file, print.it = TRUE) 150 | # print(GOplotfunction()) 151 | # dev.off() 152 | ggsave(file, GOplotfunction(),width = 10, height = 10, units = "in",pointsize=5.2,fonts=c("serif", "Palatino")) 153 | }, 154 | contentType = 'image/eps' 155 | ) 156 | output$downloadDatatiff <- downloadHandler( 157 | filename = function() { 158 | paste("output", Sys.time(), '.tiff', sep='') 159 | }, 160 | 161 | content = function(file) { 162 | ggsave(file, GOplotfunction(),width = 10, height = 10, units = "in",pointsize=5.2) 163 | 164 | }, 165 | contentType = 'image/eps' 166 | ) 167 | ################################# 168 | 169 | 170 | 171 | 172 | 173 | #################### 174 | #KEGG plotting functiuon 175 | #################### 176 | datasetInput2 <- reactive({ 177 | 178 | example<-read.table("data/TBtools.KEGG.enrichment.result.xls",header=T,sep="\t") 179 | inFile <- input$file2 180 | if (!is.null(inFile)){ 181 | 182 | data<-read.table(inFile$datapath, header=input$header2, sep=input$sep2, stringsAsFactors=F) 183 | 184 | } 185 | switch(input$dataset2, 186 | "example" = example, 187 | "upload" = data 188 | ) 189 | 190 | }) 191 | 192 | 193 | ##enrichment KEGG data 194 | 195 | # output upload dataset or example dataset 196 | output$summaryKegg <- DT::renderDataTable(datasetInput2()[,-8]) 197 | 198 | 199 | ################ 200 | ##plot kegganalysis outputfunction 201 | ################ 202 | 203 | KEGGplotfunction<-function(){ 204 | enrichmentInfo=datasetInput2() 205 | enrichmentInfoMod<-enrichmentInfo[enrichmentInfo$corrected.p.value.BH.method.<=5e-2 & enrichmentInfo$GeneHitsInSelectedSet>=5,] 206 | colnames(enrichmentInfoMod)<-c("ID","NumberOfGeneInSelectedSet","AllGenesInSelectedSet","GeneHitsInBackground","AllGenesInBackground","p-value","EnrichmentFactor","GeneListInSelectedSets","p_adjust") 207 | enrichmentInfoMod$ID<-gsub("^\\s*\\d{5}\\s+","",enrichmentInfoMod$ID,perl=T) 208 | p<-ggplot(enrichmentInfoMod)+ 209 | geom_point(aes(x=EnrichmentFactor,y=ID,size=NumberOfGeneInSelectedSet,color=p_adjust)) +theme_bw()+ 210 | theme( 211 | plot.title=element_text(face="bold",vjust=1.0), 212 | axis.title.x=element_text(face="bold",vjust=-0.2), 213 | axis.title.y=element_text(face="bold"), 214 | axis.text.y=element_text(hjust=1.0,colour="black"), 215 | axis.text.x=element_text(angle=0,colour="black") 216 | )+ggtitle("Statistics of KEGG Pathway Enrichment")+ 217 | ylab("Pathway")+ 218 | xlab("Enrichment Factor") 219 | 220 | } 221 | 222 | output$KEGGplotRender<-renderPlot({ 223 | print(KEGGplotfunction()) 224 | },width = 800,height=800 225 | ) 226 | 227 | 228 | 229 | ################################ 230 | #download plot option 231 | output$downloadDataKEGGPNG <- downloadHandler( 232 | filename = function() { 233 | paste("output", Sys.time(), '.png', sep='') 234 | }, 235 | 236 | content = function(file) { 237 | ggsave(file, KEGGplotfunction(),width = 10, height = 10, units = "in",pointsize=5.2) 238 | }, 239 | contentType = 'image/png' 240 | ) 241 | 242 | 243 | output$downloadDataKEGGPDF <- downloadHandler( 244 | filename = function() { 245 | paste("output", Sys.time(), '.pdf', sep='') 246 | }, 247 | 248 | content = function(file) { 249 | ggsave(file, KEGGplotfunction(),width = 10, height = 10, units = "in",pointsize=4) 250 | }, 251 | contentType = 'image/pdf' 252 | ) 253 | 254 | output$downloadDataKEGGEPS <- downloadHandler( 255 | filename = function() { 256 | paste("output", Sys.time(), '.eps', sep='') 257 | }, 258 | 259 | content = function(file) { 260 | ggsave(file, KEGGplotfunction(),width = 10, height = 10, units = "in",pointsize=4,fonts=c("serif", "Palatino")) 261 | 262 | }, 263 | contentType = 'image/eps' 264 | ) 265 | output$downloadDataKEGGtiff <- downloadHandler( 266 | filename = function() { 267 | paste("output", Sys.time(), '.tiff', sep='') 268 | }, 269 | 270 | content = function(file) { 271 | ggsave(file, KEGGplotfunction(),width = 10, height = 10, units = "in",pointsize=4) 272 | 273 | }, 274 | contentType = 'image/eps' 275 | ) 276 | ################################# 277 | 278 | 279 | }) 280 | 281 | 282 | 283 | -------------------------------------------------------------------------------- /inst/TBploter/ui.R: -------------------------------------------------------------------------------- 1 | library(shiny) 2 | library(shinydashboard) 3 | library(shinyBS) 4 | 5 | dashboardPage( 6 | dashboardHeader(title = "Plot server for TBtools"), 7 | dashboardSidebar( 8 | tags$link(rel="stylesheet",type="text/css",href="main.css"), 9 | sidebarMenu( 10 | menuItem("Introducction", tabName = "introduction"), 11 | menuItem("GOPlot", tabName = "GOenrichment",icon = icon("table")), 12 | menuItem("KeggPlot", tabName = "KeggPlot",icon = icon("table")) 13 | ) 14 | ), 15 | dashboardBody( 16 | tabItems( 17 | tabItem("introduction", 18 | box( 19 | width = 4, status = "info", solidHeader = TRUE,collapsible = TRUE, 20 | title = "Read Me", 21 | tags$a(href="http://cj-chen.github.io/tbtools/Introduction/",strong("TBtools")), 22 | p("is a Toolset written by CJ-Chen for wet-lab biologists.It aims at facilitating some common and elaborate but simple molecular analysis tasks such as sequences extract, gene set functional enrichment It is easy to use and can run in all Operating system including Mac, Linux, Windows, which has ",tags$a(href="http://www.oracle.com/technetwork/java/javase/downloads/jre8-downloads-2133155.html","Java run time environment higher than 1.6")," 23 | . However, TBtools may mainly focus on data analysis procedure which make it diffcult to plot fancy figures as well as publishable. 24 | To cover the shortage, we implemented an inteactive plot websever using shiny programing env, and named ",strong("TBploter")), 25 | br(), 26 | p("To allow running this app locally, we also released a R pakcages to gitHub. Users can install it by following command in R env"), 27 | code("if (!require(\"devtools\"))"), 28 | br(), 29 | code("install.packages(\"devtools\")"), 30 | br(), 31 | code(" devtools::install_github(\"likelet/PlotAppForTBtools\")"), 32 | br(), 33 | strong("This application was created by "), 34 | tags$a(href="mailto:zhaoqi3@mail2.sysu.edu.cn",strong("Qi Zhao")), 35 | strong(' from '), 36 | tags$a(href="http://english.sysucc.org.cn/",strong("SYSUCC")), 37 | strong(" and "), 38 | tags$a(href="mailto:120509419@qq.com",strong("Chenjie Chen")), 39 | strong(' from '), 40 | tags$a(href="http://www.scau.edu.cn/",strong("SCAU")), 41 | strong('. Please let us know if you find bugs or have new feature request.This application uses the'), 42 | tags$a(href="http://www.rstudio.com/shiny/",strong("shiny package from RStudio.")) 43 | ), 44 | box( 45 | width = 8, status = "info", solidHeader = TRUE,collapsible = TRUE, 46 | title = "Workflow", 47 | tags$img(src="image/workflow.png") 48 | ) 49 | ), 50 | 51 | ###function 1 52 | tabItem("GOenrichment", 53 | fluidRow( 54 | box( 55 | width = 4, status = "info", solidHeader = TRUE,collapsible = TRUE, 56 | title = "Data Input", 57 | p("Using GO enrichment analysis output data generated by TBtools, you can simply upload the ",code("TBtools.level2.counts.table.xls")," file into this app. Just clicked the ",code("Upload")," button and enjoy the plotting trip"), 58 | radioButtons("dataset", strong("Dataset"), c(Example = "example", Upload = "upload"),selected = 'example'), 59 | 60 | conditionalPanel( 61 | condition = "input.dataset == 'upload'", 62 | fileInput('file1', 'Choose CSV/text File', 63 | accept=c('text/csv', 'text/comma-separated-values,text/plain', '.csv')), 64 | checkboxInput('header', 'Header', FALSE), 65 | radioButtons('sep', 'Separator', 66 | c(Comma=',', 67 | Semicolon=';', 68 | Tab='\t'), 69 | '\t'), 70 | radioButtons('quote', 'Quote', 71 | c(None='', 72 | 'Double Quote'='"', 73 | 'Single Quote'="'"), 74 | '') 75 | ), 76 | # numericInput('geneMappedGo', 'Total Annotated Genes',13000,max=30000,min=0), 77 | checkboxInput("Issorted","Sorted Counts",TRUE), 78 | tags$button(id="goPlot",type="button",class="btn btn-primary action-button","GO PLOT!"), 79 | br(), 80 | br(), 81 | strong("This application was created by "), 82 | tags$a(href="mailto:zhaoqi3@mail2.sysu.edu.cn",strong("Qi Zhao")), 83 | strong(' from '), 84 | tags$a(href="http://gps.biocuckoo.org/",strong("Ren Lab")), 85 | strong(" in "), 86 | tags$a(href="http://english.sysucc.org.cn/",strong("SYSUCC")), 87 | strong('. Please let us know if you find bugs or have new feature request.This application uses the'), 88 | tags$a(href="http://www.rstudio.com/shiny/",strong("shiny package from RStudio.")) 89 | 90 | 91 | ), 92 | box( 93 | width = 8, status = "success",solidHeader = TRUE,collapsible = TRUE, 94 | title="Dataset", 95 | bsAlert("alertLength"), 96 | DT::dataTableOutput("summaryGO") 97 | 98 | 99 | ), 100 | bsModal("GOPlotModal", h3("Fancy Plot"), "goPlot", size = "large", 101 | div( 102 | downloadLink('downloadDataPNG', 'Download PNG-file'), 103 | downloadLink('downloadDataPDF', 'Download PDF-file',class="downloadLinkred"), 104 | downloadLink('downloadDataEPS', 'Download EPS-file',class="downloadLinkblue"), 105 | downloadLink('downloadDatatiff', 'Download TIFF-file',class="downloadLinkgreen") 106 | ), 107 | selectInput("theme", "Plot Theme:", 108 | c("Tufte","Economist","Solarized","Stata","Excel 2003","Inverse Gray","Fivethirtyeight","Tableau","Stephen","Wall Street","GDocs","Calc","Pander","High 109 | charts")), 110 | plotOutput("GOplotRender",height="100%",width=800) 111 | 112 | ) 113 | 114 | ) 115 | ), 116 | tabItem("KeggPlot", 117 | fluidRow( 118 | box( 119 | width = 3, status = "info", solidHeader = TRUE,collapsible = TRUE, 120 | title = "Data Input", 121 | p("This tab function was developed for plotting ",code("TBtools.KEGG.enrichment.result.xls")," file, which output as KEGG pathway enrichment analysis result by TBtools. Just clicked the ",code("Upload")," button and enjoy the plotting trip"), 122 | 123 | radioButtons("dataset2", strong("Dataset"), c(Example = "example", Upload = "upload"),selected = 'example'), 124 | 125 | conditionalPanel( 126 | condition = "input.dataset2 == 'upload'", 127 | fileInput('file2', 'Choose CSV/text File', 128 | accept=c('text/csv', 'text/comma-separated-values,text/plain', '.csv')), 129 | checkboxInput('header2', 'Header', FALSE), 130 | radioButtons('sep2', 'Separator', 131 | c(Comma=',', 132 | Semicolon=';', 133 | Tab='\t'), 134 | '\t'), 135 | radioButtons('quote2', 'Quote', 136 | c(None='', 137 | 'Double Quote'='"', 138 | 'Single Quote'="'"), 139 | '') 140 | ), 141 | # numericInput('geneMappedGo', 'Total Annotated Genes',13000,max=30000,min=0), 142 | tags$button(id="keggPlot",type="button",class="btn btn-primary action-button","GO PLOT!"), 143 | br(), 144 | br(), 145 | strong("This application was created by "), 146 | tags$a(href="mailto:zhaoqi3@mail2.sysu.edu.cn",strong("Qi Zhao")), 147 | strong(' from '), 148 | tags$a(href="http://gps.biocuckoo.org/",strong("Ren Lab")), 149 | strong(" in "), 150 | tags$a(href="http://english.sysucc.org.cn/",strong("SYSUCC")), 151 | strong('. Please let us know if you find bugs or have new feature request.This application uses the'), 152 | tags$a(href="http://www.rstudio.com/shiny/",strong("shiny package from RStudio.")) 153 | ), 154 | box( 155 | width = 9, status = "success",solidHeader = TRUE,collapsible = TRUE, 156 | title="Dataset", 157 | DT::dataTableOutput("summaryKegg") 158 | ), 159 | bsModal("KEGGPlotModal", h3("Fancy Plot"), "keggPlot", size = "large", 160 | div( 161 | downloadLink('downloadDataKEGGPNG', 'Download PNG-file'), 162 | downloadLink('downloadDataKEGGPDF', 'Download PDF-file',class="downloadLinkred"), 163 | downloadLink('downloadDataKEGGEPS', 'Download EPS-file',class="downloadLinkblue"), 164 | downloadLink('downloadDataKEGGtiff', 'Download TIFF-file',class="downloadLinkgreen") 165 | ), 166 | # selectInput("themekegg", "Plot Theme:", 167 | # c("Tufte","Economist","Solarized","Stata","Excel 2003","Inverse Gray","Fivethirtyeight","Tableau","Stephen","Wall Street","GDocs","Calc","Pander","High 168 | # charts")), 169 | plotOutput("KEGGplotRender",height="100%",width=800) 170 | 171 | ) 172 | 173 | ) 174 | ) 175 | ) 176 | ) 177 | ) -------------------------------------------------------------------------------- /inst/TBploter/www/image/GOanalysis.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/likelet/PlotAppForTBtools/2307ff3c333768cf806059b48d24e3ff4c14e2d0/inst/TBploter/www/image/GOanalysis.png -------------------------------------------------------------------------------- /inst/TBploter/www/image/KEGGanalysis.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/likelet/PlotAppForTBtools/2307ff3c333768cf806059b48d24e3ff4c14e2d0/inst/TBploter/www/image/KEGGanalysis.png -------------------------------------------------------------------------------- /inst/TBploter/www/image/screenshot.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/likelet/PlotAppForTBtools/2307ff3c333768cf806059b48d24e3ff4c14e2d0/inst/TBploter/www/image/screenshot.png -------------------------------------------------------------------------------- /inst/TBploter/www/image/workflow.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/likelet/PlotAppForTBtools/2307ff3c333768cf806059b48d24e3ff4c14e2d0/inst/TBploter/www/image/workflow.png -------------------------------------------------------------------------------- /inst/TBploter/www/main.css: -------------------------------------------------------------------------------- 1 | .downloadLinkred 2 | { 3 | /* position: absolute; 4 | top: 2px; 5 | left: 15px; 6 | width: 50px; 7 | */ 8 | color: red; 9 | } 10 | .downloadLinkblue 11 | { 12 | /* position: absolute; 13 | top: 2px; 14 | left: 15px; 15 | width: 50px; 16 | */ 17 | color: blue; 18 | } 19 | .downloadLinkgreen 20 | { 21 | /* position: absolute; 22 | top: 2px; 23 | left: 15px; 24 | width: 50px; 25 | */ 26 | color: green; 27 | } -------------------------------------------------------------------------------- /man/TBploter.Rd: -------------------------------------------------------------------------------- 1 | \name{TBploter} 2 | \alias{TBploter} 3 | \title{Plot server for TBtools Output} 4 | \usage{ 5 | TBploter() 6 | } 7 | \description{ 8 | Plot server for TBtools Output. 9 | } 10 | \examples{ 11 | TBploter() 12 | } 13 | --------------------------------------------------------------------------------