├── .copier-answers.yml ├── .git_archival.txt ├── .gitattributes ├── .github ├── ISSUE_TEMPLATE │ ├── 0-general_issue.md │ ├── 1-bug_report.md │ ├── 2-feature_request.md │ └── README.md ├── copilot-instructions.md ├── dependabot.yml ├── pull_request_template.md └── workflows │ ├── README.md │ ├── asv-main.yml │ ├── asv-nightly.yml │ ├── asv-pr.yml │ ├── build-documentation.yml │ ├── pre-commit-ci.yml │ ├── publish-benchmarks-pr.yml │ ├── publish-to-pypi.yml │ ├── smoke-test.yml │ └── testing-and-coverage.yml ├── .gitignore ├── .pre-commit-config.yaml ├── .readthedocs.yml ├── .setup_dev.sh ├── LICENSE ├── README.md ├── README_RSP.md ├── benchmarks ├── README.md ├── __init__.py ├── asv.conf.json ├── benchmarks.py ├── data_request_benchmarks.py └── vector_db_benchmarks.py ├── docs ├── Makefile ├── _static │ ├── hyrax_design.png │ ├── hyrax_header.png │ └── umap_visualization.JPG ├── about.rst ├── architecture_overview.rst ├── conf.py ├── configuration.rst ├── data_set_splits.rst ├── dev_guide.rst ├── external_libraries.rst ├── index.rst ├── model_comparison.rst ├── notebooks.rst ├── notebooks │ ├── README.md │ ├── model_input_1.ipynb │ ├── model_input_2.ipynb │ └── model_input_3.ipynb ├── pre_executed │ ├── README.md │ ├── custom_dataset.ipynb │ ├── export_model.ipynb │ ├── hsc_train_to_similarity_search.ipynb │ ├── hyrax_hats_cutouts.ipynb │ ├── hyraxql_demo.ipynb │ ├── hyraxql_iterable_demo.ipynb │ ├── mlflow_screenshot.JPG │ ├── mpr_demo.ipynb │ ├── mpr_demo_plotting.py │ ├── tensorboard_screenshot.JPG │ ├── train_model.ipynb │ ├── umap_visualization.JPG │ ├── vector_db_demo.ipynb │ └── visualize.ipynb ├── requirements.txt └── verbs.rst ├── example_notebooks └── GettingStartedDownloader.ipynb ├── pyproject.toml ├── src ├── hyrax │ ├── 3d_viz │ │ ├── .gitattributes │ │ ├── fits.js │ │ ├── image-viewer.js │ │ ├── index.html │ │ ├── plotly_3d.py │ │ ├── readme.md │ │ ├── save_umap_to_json.py │ │ ├── script.js │ │ ├── start_3d_viz_server.py │ │ └── styles.css │ ├── __init__.py │ ├── config_utils.py │ ├── data_sets │ │ ├── __init__.py │ │ ├── data_provider.py │ │ ├── data_set_registry.py │ │ ├── downloaded_lsst_dataset.py │ │ ├── fits_image_dataset.py │ │ ├── hsc_data_set.py │ │ ├── hyrax_cifar_data_set.py │ │ ├── hyrax_csv_dataset.py │ │ ├── inference_dataset.py │ │ ├── lsst_dataset.py │ │ ├── random │ │ │ ├── __init__.py │ │ │ └── hyrax_random_dataset.py │ │ └── tensor_cache_mixin.py │ ├── download.py │ ├── downloadCutout │ │ ├── LINCC_README.md │ │ ├── README.md │ │ ├── __init__.py │ │ └── downloadCutout.py │ ├── download_stats.py │ ├── gpu_monitor.py │ ├── hyrax.py │ ├── hyrax_default_config.toml │ ├── model_exporters.py │ ├── models │ │ ├── __init__.py │ │ ├── hsc_autoencoder.py │ │ ├── hsc_dcae.py │ │ ├── hyrax_autoencoder.py │ │ ├── hyrax_autoencoderv2.py │ │ ├── hyrax_cnn.py │ │ ├── hyrax_loopback.py │ │ ├── image_dcae.py │ │ ├── model_registry.py │ │ └── simclr.py │ ├── plugin_utils.py │ ├── prepare.py │ ├── pytorch_ignite.py │ ├── rebuild_manifest.py │ ├── vector_dbs │ │ ├── __init__.py │ │ ├── chromadb_impl.py │ │ ├── qdrantdb_impl.py │ │ ├── vector_db_factory.py │ │ └── vector_db_interface.py │ └── verbs │ │ ├── __init__.py │ │ ├── database_connection.py │ │ ├── infer.py │ │ ├── lookup.py │ │ ├── model.py │ │ ├── save_to_database.py │ │ ├── search.py │ │ ├── to_onnx.py │ │ ├── train.py │ │ ├── umap.py │ │ ├── verb_registry.py │ │ └── visualize.py └── hyrax_cli │ └── main.py └── tests └── hyrax ├── conftest.py ├── test_chromadb_impl.py ├── test_config_utils.py ├── test_csv_dataset.py ├── test_data ├── csv_test │ └── sample_data.csv ├── small_dataset_hscstars │ ├── images │ │ ├── 10-cutout-HSC-I-8279-pdr2_wide.fits │ │ ├── 11-cutout-HSC-I-8279-pdr2_wide.fits │ │ ├── 2-cutout-HSC-I-8279-pdr2_wide.fits │ │ ├── 3-cutout-HSC-I-8279-pdr2_wide.fits │ │ ├── 4-cutout-HSC-I-8279-pdr2_wide.fits │ │ ├── 5-cutout-HSC-I-8279-pdr2_wide.fits │ │ ├── 6-cutout-HSC-I-8279-pdr2_wide.fits │ │ ├── 7-cutout-HSC-I-8279-pdr2_wide.fits │ │ ├── 8-cutout-HSC-I-8279-pdr2_wide.fits │ │ └── 9-cutout-HSC-I-8279-pdr2_wide.fits │ ├── star_cat_correct.astropy.csv │ ├── star_cat_correct.csv │ ├── star_cat_correct.fits │ ├── star_cat_correct.pq │ └── star_cat_correct.votable ├── test_config_quoted_tables.toml ├── test_default_config.toml ├── test_user_config.toml └── test_user_config_repeated_keys.toml ├── test_data_provider.py ├── test_downloaded_lsst_dataset.py ├── test_e2e.py ├── test_fits_image_dataset.py ├── test_hsc_dataset.py ├── test_infer.py ├── test_inference_dataset.py ├── test_model_registry.py ├── test_nan.py ├── test_packaging.py ├── test_plugin_utils.py ├── test_pytorch_ignite.py ├── test_qdrant_impl.py ├── test_save_to_database.py ├── test_splits.py ├── test_to_onnx.py ├── test_train.py └── test_umap.py /.copier-answers.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lincc-frameworks/hyrax/HEAD/.copier-answers.yml 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