├── README.md ├── main.py ├── requirements.txt └── utils ├── Nxstat.py ├── PuzzleHiC2JBAT.py ├── agp2assembly.py ├── assembly2agp.py ├── convert_data.py ├── generate_fasta.py ├── generate_test_data.py └── get_chromsize.py /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/linguoliang/puzzle-hi-c/HEAD/README.md -------------------------------------------------------------------------------- /main.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/linguoliang/puzzle-hi-c/HEAD/main.py -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/linguoliang/puzzle-hi-c/HEAD/requirements.txt -------------------------------------------------------------------------------- /utils/Nxstat.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/linguoliang/puzzle-hi-c/HEAD/utils/Nxstat.py -------------------------------------------------------------------------------- /utils/PuzzleHiC2JBAT.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/linguoliang/puzzle-hi-c/HEAD/utils/PuzzleHiC2JBAT.py -------------------------------------------------------------------------------- /utils/agp2assembly.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/linguoliang/puzzle-hi-c/HEAD/utils/agp2assembly.py -------------------------------------------------------------------------------- /utils/assembly2agp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/linguoliang/puzzle-hi-c/HEAD/utils/assembly2agp.py -------------------------------------------------------------------------------- /utils/convert_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/linguoliang/puzzle-hi-c/HEAD/utils/convert_data.py -------------------------------------------------------------------------------- /utils/generate_fasta.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/linguoliang/puzzle-hi-c/HEAD/utils/generate_fasta.py -------------------------------------------------------------------------------- /utils/generate_test_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/linguoliang/puzzle-hi-c/HEAD/utils/generate_test_data.py -------------------------------------------------------------------------------- /utils/get_chromsize.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/linguoliang/puzzle-hi-c/HEAD/utils/get_chromsize.py --------------------------------------------------------------------------------