├── .gitignore ├── README.md ├── assets ├── logo.png └── overview.png ├── coder.py ├── configs └── config.yaml ├── data_cache ├── amp_pd.py ├── circle_packing.py ├── codepde.py ├── molecular_translation.py ├── molecule.py ├── nuclei_image.py ├── openvaccine.py ├── polymer.py └── usp_p2p.py ├── database.py ├── deepevolve.py ├── discoveries ├── burgers │ ├── README.md │ ├── best_program_info.json │ ├── deepevolve_interface.py │ ├── main.py │ └── solver.py ├── circle_packing │ ├── README.md │ ├── best_program_info.json │ ├── deepevolve_interface.py │ └── main.py ├── molecular_translation │ ├── README.md │ ├── best_program_info.json │ ├── deepevolve_interface.py │ └── main.py ├── molecule │ ├── README.md │ ├── best_program_info.json │ ├── conv.py │ ├── dataset.py │ ├── deepevolve_interface.py │ ├── main_pyg.py │ ├── model.py │ └── utils.py ├── nuclei_image │ ├── README.md │ ├── best_program_info.json │ ├── deepevolve_interface.py │ └── main.py ├── openvaccine │ ├── README.md │ ├── best_program_info.json │ ├── deepevolve_interface.py │ └── main.py ├── parkinson_disease │ ├── README.md │ ├── base_model.py │ ├── best_program_info.json │ ├── config.py │ ├── data_loader.py │ ├── deepevolve_interface.py │ ├── lightgbm_model.py │ ├── main.py │ ├── metrics.py │ ├── neural_network.py │ ├── preprocessing.py │ ├── public_timeseries_testing_util.py │ └── utils.py ├── polymer │ ├── README.md │ ├── best_program_info.json │ ├── conv.py │ ├── deepevolve_interface.py │ ├── main_pyg.py │ ├── model.py │ ├── preprocessing.py │ └── utils.py └── usp_p2p │ ├── README.md │ ├── best_program_info.json │ ├── deepevolve_interface.py │ └── main.py ├── examples ├── burgers │ ├── README.md │ ├── info.json │ ├── initial_code │ │ ├── deepevolve_interface.py │ │ ├── main.py │ │ └── solver.py │ ├── initial_idea.json │ └── initial_metrics.json ├── circle_packing │ ├── README.md │ ├── ckpt │ │ ├── best │ │ │ ├── best_program_concatenated.py │ │ │ ├── best_program_info.json │ │ │ ├── deepevolve_interface.py │ │ │ └── main.py │ │ └── checkpoint_50 │ │ │ ├── metadata.json │ │ │ └── programs │ │ │ ├── 06976df4-d5ce-469a-bacf-ce107c6a5b00.json │ │ │ ├── 094742ee-ec68-45f4-97e9-140b86fdc657.json │ │ │ ├── 09507cfc-3d17-4547-8664-dbca302803c2.json │ │ │ ├── 2bb60c45-489b-4e92-ac96-001e03788020.json │ │ │ ├── 2f3f5db2-7b0d-489e-9dc2-301b1f850d71.json │ │ │ ├── 3414c339-4428-47e4-97a6-4173d5c796b6.json │ │ │ ├── 3577ad71-c1a2-482d-88d3-8ce52ab8e670.json │ │ │ ├── 3c9ac271-200f-49d9-9bb9-55eb4884ce98.json │ │ │ ├── 453b9d57-b5f6-421c-84a1-93c58154165b.json │ │ │ ├── 461b048f-84f2-4027-b1c8-99ec5cfcfdb8.json │ │ │ ├── 58af2a81-381b-437a-9e13-e0a8fc29e4ed.json │ │ │ ├── 6483234a-a079-4c7d-aafa-92ff989573cb.json │ │ │ ├── 6d84c330-e329-4fe6-ae6f-70a514db7a60.json │ │ │ ├── 7aac803d-be83-4492-96f4-ee3af60e7cf9.json │ │ │ ├── 80a1d209-186a-4479-bb99-dedc3c1df2cc.json │ │ │ ├── 9df980dc-2c8f-4ece-871e-90486b4a7245.json │ │ │ ├── c410687e-6035-406c-9588-b0aa7b838945.json │ │ │ ├── c42f30e9-7ab7-4f5a-b78a-87db894e6971.json │ │ │ ├── e0e8bb8f-7f5b-4ff0-8877-607d16e7e904.json │ │ │ ├── e304e0fd-7bf3-4cbb-8fed-5f960f2aca78.json │ │ │ ├── e6ff1491-588d-45f2-9f29-7b407425b3b0.json │ │ │ ├── e7af8df5-7c88-4dd8-b299-8ef069b24062.json │ │ │ ├── f52bb9ba-cd8f-44e8-8978-d967cf55cfeb.json │ │ │ ├── f9fff391-dbbc-4a0b-a042-4ae56c977c72.json │ │ │ └── fc9390d8-5746-45f8-89bf-cc820674ff75.json │ ├── info.json │ ├── initial_code │ │ ├── deepevolve_interface.py │ │ ├── main.py │ │ └── requirements.txt │ ├── initial_idea.json │ └── initial_metrics.json ├── molecular_translation │ ├── README.md │ ├── info.json │ ├── initial_code │ │ ├── deepevolve_interface.py │ │ ├── main.py │ │ └── requirements.txt │ ├── initial_idea.json │ └── initial_metrics.json ├── molecule │ ├── README.md │ ├── info.json │ ├── initial_code │ │ ├── LICENSE │ │ ├── README.md │ │ ├── conv.py │ │ ├── dataset.py │ │ ├── deepevolve_interface.py │ │ ├── main_pyg.py │ │ ├── model.py │ │ ├── requirements.txt │ │ └── utils.py │ ├── initial_idea.json │ └── initial_metrics.json ├── nuclei_image │ ├── README.md │ ├── info.json │ ├── initial_code │ │ ├── deepevolve_interface.py │ │ ├── main.py │ │ ├── requirements.txt │ │ └── runtemp.sh │ ├── initial_idea.json │ └── initial_metrics.json ├── openvaccine │ ├── README.md │ ├── info.json │ ├── initial_code │ │ ├── deepevolve_interface.py │ │ ├── main.py │ │ └── requirements.txt │ ├── initial_idea.json │ └── initial_metrics.json ├── parkinson_disease │ ├── README.md │ ├── info.json │ ├── initial_code │ │ ├── base_model.py │ │ ├── config.py │ │ ├── data_loader.py │ │ ├── deepevolve_interface.py │ │ ├── lightgbm_model.py │ │ ├── main.py │ │ ├── metrics.py │ │ ├── neural_network.py │ │ ├── preprocessing.py │ │ ├── public_timeseries_testing_util.py │ │ ├── requirements.txt │ │ └── utils.py │ └── initial_metrics.json ├── polymer │ ├── README.md │ ├── info.json │ ├── initial_code │ │ ├── LICENSE │ │ ├── conv.py │ │ ├── deepevolve_interface.py │ │ ├── main_pyg.py 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