├── .DS_Store ├── .gitignore ├── ALD-App ├── ALD_app.py ├── README.md ├── config.py ├── datasets │ ├── PLoverlap_data.csv │ ├── PLoverlap_median.csv │ ├── data_liver.csv │ └── data_plasma.csv ├── environment.yml ├── images │ └── Study_overview.jpg └── requirements.txt ├── ALD-ML ├── .DS_Store ├── ALD_META_ML.ipynb ├── ALD_ML.ipynb ├── ALD_ML_STATA.ipynb ├── README.md ├── analyses_other.do ├── analysis_Harrells_C.do ├── analysis_Harrells_C_0_data.do ├── data │ └── raw │ │ └── README.md ├── docs │ └── setup.md ├── environment.yml ├── helper.py ├── requirements.txt ├── roc_comparison │ ├── README.md │ ├── compare_auc_delong_xu.py │ ├── compute.py │ └── test.py └── src │ ├── __init__.py │ ├── cross_validation.py │ ├── delong.py │ ├── final_model.py │ ├── imputation.py │ ├── pandas.py │ ├── plots.py │ ├── scoring.py │ ├── sklearn.py │ ├── threshold_classifier.py │ └── widgets.py ├── ALD-PA ├── ALD_PA.ipynb ├── environment.yml ├── requirements.txt └── src │ └── statistical_testing.py ├── 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