├── .gitignore ├── LICENSE ├── README.md ├── docs └── nifpi_meeting_pres.pdf ├── media ├── 15-31m.png ├── 19-31m.png ├── 22-49m.png ├── 32-42m.png ├── 39-369cm.png ├── drawing.svg ├── drawing1.png ├── drawing2.png ├── drawing3.png ├── drawing4.png ├── drawing5.png ├── drawing6.png ├── drawing7.png ├── fcn.png ├── fcn2.png ├── fcn_heights.png ├── fcn_heights2.png ├── gr.png ├── h_predictions0.jpg ├── h_predictions1.jpg ├── h_raster_0.jpg ├── h_raster_1.jpg ├── high_res.png ├── hov_pred.jpg ├── hov_raster.jpg ├── hovermap.png ├── hovermap_seg.png ├── hvp.png ├── hvp_heights.png ├── inventory.png ├── inventory_fcnsw.csv ├── inventory_hovermap.csv ├── inventory_hovermap_crop.csv ├── inventory_hvp.csv ├── inventory_tumut.csv ├── inventory_utas.csv ├── predictions.jpg ├── predictions1.jpg ├── raster_0.jpg ├── raster_1.jpg ├── seedlings.png ├── seedlings_data.png ├── segmentation.png ├── sparse.png ├── tumut.png ├── tumut_heights.png ├── utas.png └── utas_heights.png ├── requirements.txt ├── requirements_seg.txt └── src ├── darknet_scripts ├── auto_setup_yolo.sh ├── custom_setup │ ├── split_train_test.py │ ├── voc_label_custom.py │ ├── yolov3-custom-test.cfg │ ├── yolov3-custom.cfg │ ├── yolov3-tiny-custom-test.cfg │ └── yolov3-tiny-custom.cfg ├── readme └── setup.sh ├── example_detection_scripts ├── carabost_detect.py ├── hovermap_detect.py ├── hvp_detect.py ├── tumut_detect1.py ├── tumut_detect2.py └── utas_detect.py ├── example_full_pipeline_scripts ├── hovermap_pipeline.py ├── hovermap_pipeline_las.py └── tumut_pipeline.py ├── example_segmentation_scripts ├── tumut_detect.py ├── tumut_seg1.py ├── tumut_seg2.py └── tumut_uncertainty.py ├── forest3D ├── detection_tools.py ├── ground_removal.py ├── inventory_tools.py ├── latentEncoder.py ├── lidar_IO.py ├── network_ops.py ├── object_detectors.py ├── processLidar.py ├── query_methods.py ├── stemSegmenter.py ├── treeDetector.py ├── utilities.py ├── voxelSegModels.py └── voxelVaeModels.py ├── gen_raster_scripts ├── gen_.py ├── gen_training_rasters_carabost.py ├── gen_training_rasters_hovermap.py ├── gen_training_rasters_hvp.py ├── gen_training_rasters_hvp_anno.py ├── gen_training_rasters_tumut1.py ├── gen_training_rasters_tumut2.py ├── gen_training_rasters_utas.py └── gen_training_rasters_utas_anno.py ├── hovermap ├── extract_stems_script.py ├── tp_visualisation.py └── treepointcloud.py ├── train_segmenter_scripts ├── collate_cc_segments.py ├── train_hovemap_voxnet.py ├── train_tumut1_voxnet.py └── train_tumut2_voxnet.py └── train_vae_scripts └── train_vae_tumut.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lloydwindrim/forest_3d_app/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lloydwindrim/forest_3d_app/HEAD/LICENSE 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