├── .github └── workflows │ └── wheel.yml ├── .gitignore ├── .readthedocs.yaml ├── LICENSE ├── MANIFEST.in ├── README.rst ├── atrfinder.py ├── benchmark ├── get_fasta_info.py ├── make_bed.py ├── make_wide_data.py ├── perfect_imperfect_benchmark.sh ├── perfect_microsatellite_benchmark.sh └── perfect_minisatellite_benchmark.sh ├── docs ├── Makefile ├── api_reference.rst ├── changelog.rst ├── conf.py ├── index.rst ├── installation.rst ├── make.bat ├── requirements.txt └── usage.rst ├── pytrfcli.py ├── requirements.txt ├── setup.py ├── src ├── atr.c ├── atr.h ├── compat.h ├── etr.c ├── etr.h ├── gtr.c ├── gtr.h ├── itr.c ├── itr.h ├── pytrf.c ├── str.c ├── str.h └── version.h ├── test.py └── tests ├── __init__.py └── data └── test.fa.gz /.github/workflows/wheel.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lmdu/pytrf/HEAD/.github/workflows/wheel.yml 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