├── .clang-format ├── .cmake-format.py ├── .gitignore ├── .gitlab-ci.astron.yml ├── .gitlab-ci.common.yml ├── .gitlab-ci.ska.yml ├── .gitlab-ci.wheels.yml ├── .gitmodules ├── .isort.cfg ├── .readthedocs.yaml ├── CHANGELOG.md ├── CMake ├── FindCFITSIO.cmake ├── FindCasacore.cmake ├── FindNVML.cmake └── FindSphinx.cmake ├── CMakeLists.txt ├── CPack ├── CMakeLists.txt └── DetermineTargetCPU.cmake ├── LICENSE ├── README.md ├── aartfaacreader ├── AntennaConfig.h └── test │ └── unit │ └── tAntennaConfig.cc ├── antennaflagger ├── Flagger.cc ├── Flagger.h └── test │ └── unit │ └── tFlagger.cc ├── base ├── Apply.cc ├── Apply.h ├── Baseline.h ├── BaselineSelection.cc ├── BaselineSelection.h ├── BdaBuffer.cc ├── CalType.cc ├── CalType.h ├── ComponentInfo.cc ├── ComponentInfo.h ├── Cursor.h ├── CursorUtilCasa.h ├── DP3.cc ├── DPBuffer.cc ├── DPInfo.cc ├── EstimateMixed.cc ├── EstimateMixed.h ├── EstimateMixedLBFGS.cc ├── FlagCounter.cc ├── FlagCounter.h ├── GainCalAlgorithm.cc ├── GainCalAlgorithm.h ├── GaussianSource.cc ├── GaussianSource.h ├── IDGConfiguration.h ├── MS.cc ├── MS.h ├── Main.cc ├── ModelComponent.h ├── ModelComponentVisitor.h ├── ParsetAterms.h ├── PhaseFitter.cc ├── PhaseFitter.h ├── PointSource.cc ├── PointSource.h ├── PredictBuffer.h ├── PredictModel.h ├── ProgressMeter.cc ├── ProgressMeter.h ├── RcuMode.h ├── Simulate.cc ├── Simulate.h ├── Simulator.cc ├── Simulator.h ├── StManParsetKeys.h ├── Stokes.cc ├── Stokes.h ├── SubtableWriter.cc ├── SubtableWriter.h ├── SubtractMixed.cc ├── SubtractMixed.h ├── Telescope.cc ├── Telescope.h ├── UVWCalculator.cc ├── UVWCalculator.h ├── Version.h.in ├── __init__.py ├── msoverview.cc ├── taqlflagger └── test │ ├── LoggerFixture.h │ ├── runtests.cc │ └── unit │ ├── tBaselineSelection.cc │ ├── tBdaBuffer.cc │ ├── tBdaBuffer.h │ ├── tDP3.cc │ ├── tDPBuffer.cc │ ├── tDPInfo.cc │ ├── tMirror.cc │ ├── tMs.cc │ ├── tPredictModel.cc │ ├── tRcuMode.cc │ ├── tSimulate.cc │ ├── tSimulator.cc │ ├── tSubtableWriter.cc │ ├── tTelescope.cc │ └── tUvwCalculator.cc ├── blob ├── BlobAipsIO.cc ├── BlobAipsIO.h ├── BlobArray.cc ├── BlobArray.h ├── BlobArray.tcc ├── BlobException.h ├── BlobHeader.cc ├── BlobHeader.h ├── BlobIBufStream.cc ├── BlobIBufStream.h ├── BlobIBuffer.h ├── BlobIStream.cc ├── BlobIStream.h ├── BlobOBufStream.cc ├── BlobOBufStream.h ├── BlobOBuffer.h ├── BlobOStream.cc ├── BlobOStream.h ├── BlobSTL.h ├── BlobSTL.tcc └── BlobStreamable.h ├── ci ├── .produce-ci-metrics.py ├── address_sanitizer_suppressions.txt ├── ci-badges-func.sh ├── collect_metrics.py └── create_badges.py ├── common ├── ClusterDesc.cc ├── ClusterDesc.h ├── DataConvert.cc ├── DataConvert.h ├── DataFormat.h ├── Epsilon.h ├── Fields.cc ├── KVpair.h ├── Median.h ├── Memory.cc ├── Memory.h ├── NodeDesc.cc ├── NodeDesc.h ├── ParameterRecord.cc ├── ParameterRecord.h ├── ParameterSet.cc ├── ParameterSet.h ├── ParameterSetImpl.cc ├── ParameterSetImpl.h ├── ParameterValue.cc ├── ParameterValue.h ├── PhaseLineFitter.h ├── PrettyUnits.cc ├── PrettyUnits.h ├── ProximityClustering.cc ├── ProximityClustering.h ├── StreamUtil.h ├── StringTools.cc ├── StringTools.h ├── Timer.h ├── TypeNames.cc ├── TypeNames.h ├── TypeNames.tcc ├── ValuePerStationParsing.h ├── VdsDesc.cc ├── VdsDesc.h ├── VdsMaker.cc ├── VdsMaker.h ├── VdsPartDesc.cc ├── VdsPartDesc.h ├── baseline_indices.h ├── buffered_lane.h └── test │ ├── test_config.h.in │ └── unit │ ├── fixtures │ ├── fDirectory.h │ ├── fSkymodel.cc │ └── fSkymodel.h │ ├── tBaselineUtils.cc │ ├── tCommon.h │ ├── tFields.cc │ ├── tMedian.cc │ ├── tMemory.cc │ ├── tPhaseLineFitter.cc │ ├── tProximityClustering.cc │ ├── tStringTools.cc │ ├── tTimer.cc │ └── tValuePerStationParsing.cc ├── ddecal ├── Settings.cc ├── Settings.h ├── SolutionResampler.cc ├── SolutionResampler.h ├── SolutionWriter.cc ├── SolutionWriter.h ├── Solutions.h ├── SolverFactory.cc ├── SolverFactory.h ├── constraints │ ├── AmplitudeOnlyConstraint.h │ ├── AntennaConstraint.h │ ├── AntennaIntervalConstraint.cc │ ├── AntennaIntervalConstraint.h │ ├── Constraint.h │ ├── FaradayConstraint.cc │ ├── FaradayConstraint.h │ ├── KLFitter.cc │ ├── KLFitter.h │ ├── KernelSmoother.h │ ├── PieceWisePhaseFitter.h │ ├── PiercePoint.cc │ ├── PiercePoint.h │ ├── RotationAndDiagonalConstraint.cc │ ├── RotationAndDiagonalConstraint.h │ ├── RotationConstraint.cc │ ├── RotationConstraint.h │ ├── ScreenConstraint.cc │ ├── ScreenConstraint.h │ ├── ScreenFitter.cc │ ├── ScreenFitter.h │ ├── SmoothnessConstraint.cc │ ├── SmoothnessConstraint.h │ ├── TECConstraint.cc │ └── TECConstraint.h ├── gain_solvers │ ├── BdaSolverBuffer.cc │ ├── BdaSolverBuffer.h │ ├── DiagonalLowRankSolver.cc │ ├── DiagonalLowRankSolver.h │ ├── DiagonalSolver.cc │ ├── DiagonalSolver.h │ ├── FullJonesSolver.cc │ ├── FullJonesSolver.h │ ├── HybridSolver.cc │ ├── HybridSolver.h │ ├── IterativeDiagonalSolver.cc │ ├── IterativeDiagonalSolver.h │ ├── IterativeDiagonalSolverCuda.cc │ ├── IterativeDiagonalSolverCuda.h │ ├── IterativeFullJonesSolver.cc │ ├── IterativeFullJonesSolver.h │ ├── IterativeScalarSolver.cc │ ├── IterativeScalarSolver.h │ ├── LBFGSSolver.cc │ ├── LBFGSSolver.h │ ├── ScalarSolver.cc │ ├── ScalarSolver.h │ ├── SolveData.cc │ ├── SolveData.h │ ├── SolverBase.cc │ ├── SolverBase.h │ ├── SolverTools.cc │ ├── SolverTools.h │ └── kernels │ │ ├── Common.h │ │ ├── Complex.h │ │ ├── IterativeDiagonal.cu │ │ ├── IterativeDiagonal.h │ │ └── MatrixComplex2x2.h ├── linear_solvers │ ├── LLSSolver.cc │ ├── LLSSolver.h │ ├── NormalEquationsSolver.h │ ├── QRSolver.h │ └── SVDSolver.h └── test │ ├── integration │ ├── CMakeLists.txt │ ├── findenv.run_tmpl │ ├── resources │ │ ├── center-center.reg │ │ ├── center-dl.reg │ │ ├── center-dldm.reg │ │ ├── center-dm.reg │ │ ├── dec-center.reg │ │ ├── dec-dl.reg │ │ ├── dec-dldm.reg │ │ ├── dec-dm.reg │ │ ├── foursources.reg │ │ ├── foursources.skymodel │ │ ├── idg-fits-sources.tbz2 │ │ ├── onesource.reg │ │ ├── ra-center.reg │ │ ├── ra-dl.reg │ │ ├── ra-dldm.reg │ │ ├── ra-dm.reg │ │ ├── radec-center.reg │ │ ├── radec-dl.reg │ │ ├── radec-dldm.reg │ │ ├── radec-dm.reg │ │ └── threesources.reg │ ├── tBdaDdeCal.py │ ├── tDDECal.py │ ├── tDDECal_ref │ ├── tFaradayConstraint.py │ ├── tIDGPredict.py │ ├── tIDGPredict_ref.py │ └── tWGridderPredictDdeCal.py │ └── unit │ ├── SolverTester.cc │ ├── SolverTester.h │ ├── tAntennaConstraint.cc │ ├── tAntennaIntervalConstraint.cc │ ├── tBdaSolverBuffer.cc │ ├── tDiagonalLowRankSolver.cc │ ├── tFaradayConstraint.cc │ ├── tLBFGSSolver.cc │ ├── tLLSSolver.cc │ ├── tLinearSolvers.cc │ ├── tRotationAndDiagonalConstraint.cc │ ├── tRotationConstraint.cc │ ├── tSettings.cc │ ├── tSmoothnessConstraint.cc │ ├── tSolutionResampler.cc │ ├── tSolutionWriter.cc │ ├── tSolveData.cc │ ├── tSolverBaseMatrix.cc │ ├── tSolverFactory.cc │ ├── tSolverTools.cc │ ├── tSolvers.cc │ └── tTECConstraint.cc ├── docker ├── install_aoflagger.sh ├── install_boost.sh ├── install_everybeam.sh ├── install_fftw.sh ├── install_hdf5.sh ├── install_lua.sh ├── make_wheels.sh ├── py_wheel.docker ├── ubuntu_20_04-gcc8-full-compile ├── ubuntu_20_04_base ├── ubuntu_22_04_base └── ubuntu_24_04_base ├── docs ├── CMakeLists.txt ├── Makefile ├── _static │ └── css │ │ └── custom.css ├── commands.rst ├── conf.py.in ├── doxygen │ ├── Doxyfile.in │ ├── bda.md │ ├── demixer.md │ ├── design.md │ ├── images │ │ ├── add_baseline0.svg │ │ ├── add_baseline1.svg │ │ ├── add_baseline2.svg │ │ ├── add_baseline3.svg │ │ ├── bdapredict-bl-3-20-fail.svg │ │ ├── bdapredict-bl-3-20-success.svg │ │ ├── bdapredict-bl-3-45-fail.svg │ │ ├── bdapredict-bl-3-45-success.svg │ │ ├── ddecal.png │ │ ├── demixer_substeps.png │ │ ├── diagram.png │ │ ├── flow.png │ │ └── linear_array.svg │ ├── split-uvw-bda.md │ └── structure_review.md ├── idg-facetting │ ├── Makefile │ └── idg-facetting.tex ├── index.rst ├── requirements-docs.txt ├── rst_utils.py.patch └── schemas │ ├── AOFlagger.yml │ ├── AntennaFlagger.yml │ ├── ApplyBeam.yml │ ├── ApplyCal.yml │ ├── Averager.yml │ ├── BDAAverager.yml │ ├── Clipper.yml │ ├── ColumnReader.yml │ ├── Combine.yml │ ├── Counter.yml │ ├── DDECal.yml │ ├── Demixer.yml │ ├── Description of all parameters.yml │ ├── Description of baseline selection parameters.yml │ ├── Filter.yml │ ├── FlagTransfer.yml │ ├── GainCal.yml │ ├── H5ParmPredict.yml │ ├── IDGImager.yml │ ├── IDGPredict.yml │ ├── Input.yml │ ├── Interpolate.yml │ ├── MADFlagger.yml │ ├── Null.yml │ ├── NullStokes.yml │ ├── Output.yml │ ├── PhaseShift.yml │ ├── PreFlagger.yml │ ├── Predict.yml │ ├── PythonStep.yml │ ├── SVPInput.yml │ ├── SagecalPredict.yml │ ├── ScaleData.yml │ ├── SetBeam.yml │ ├── Split.yml │ ├── StationAdder.yml │ ├── Transfer.yml │ ├── UVWFlagger.yml │ ├── Upsample.yml │ ├── WGridderPredict.yml │ └── WSCleanWriter.yml ├── include └── dp3 │ ├── base │ ├── BdaBuffer.h │ ├── DP3.h │ ├── DPBuffer.h │ ├── DPInfo.h │ └── Direction.h │ ├── common │ ├── Fields.h │ └── Types.h │ └── steps │ └── Step.h ├── model ├── Patch.cc ├── Patch.h ├── SkyModelCache.h ├── SourceDBUtil.cc ├── SourceDBUtil.h └── test │ └── unit │ └── tSourceDBUtil.cc ├── parmdb ├── Axis.cc ├── Axis.h ├── AxisMapping.cc ├── AxisMapping.h ├── Box.cc ├── Box.h ├── Grid.cc ├── Grid.h ├── Parm.cc ├── Parm.h ├── ParmCache.cc ├── ParmCache.h ├── ParmDB.cc ├── ParmDB.h ├── ParmDBBlob.cc ├── ParmDBBlob.h ├── ParmDBCasa.cc ├── ParmDBCasa.h ├── ParmDBLocker.cc ├── ParmDBLocker.h ├── ParmDBMeta.cc ├── ParmDBMeta.h ├── ParmFacade.cc ├── ParmFacade.h ├── ParmFacadeLocal.cc ├── ParmFacadeLocal.h ├── ParmFacadeRep.cc ├── ParmFacadeRep.h ├── ParmMap.h ├── ParmSet.cc ├── ParmSet.h ├── ParmValue.cc ├── ParmValue.h ├── PatchInfo.cc ├── PatchInfo.h ├── SkymodelToSourceDB.cc ├── SkymodelToSourceDB.h ├── SourceDB.cc ├── SourceDB.h ├── SourceDBBlob.cc ├── SourceDBBlob.h ├── SourceDBCasa.cc ├── SourceDBCasa.h ├── SourceDBSkymodel.cc ├── SourceDBSkymodel.h ├── SourceData.cc ├── SourceData.h ├── SourceInfo.cc ├── SourceInfo.h ├── showsourcedb.cc └── test │ ├── integration │ ├── CMakeLists.txt │ └── tShowSourceDb.py │ └── unit │ ├── tSkymodelToSourceDB.cc │ └── tSourceDB.cc ├── pythondp3 ├── CMakeLists.txt ├── PyDpBuffer.cc ├── PyDpBuffer.h ├── PyDpInfo.cc ├── PyFields.cc ├── PyStep.cc ├── PyStep.h ├── __init__.py ├── parameterset.cc ├── pydp3.cc ├── pyfitters.cc ├── steps │ ├── README.md │ ├── __init__.py │ └── queue.py ├── test │ ├── integration │ │ ├── CMakeLists.txt │ │ ├── tImportDP3.py │ │ ├── tMakeMainSteps.py │ │ ├── tMakeStep.py │ │ └── tStepWrapper.py │ └── unit │ │ ├── CMakeLists.txt │ │ ├── mock │ │ └── mockpystep.py │ │ ├── tPyDpBuffer.py │ │ ├── tPyDpInfo.py │ │ ├── tPyFields.py │ │ ├── tPyFitters.py │ │ ├── tPyParameterSet.py │ │ ├── tPyStep.cc │ │ ├── tPyStep.py │ │ └── tQueueOutput.py └── utils.h ├── resources ├── tApplyCal_tmp.parmdb.tgz ├── tDDECal.in_MS.tgz ├── tDemix.in_MS.tgz ├── tDish.MS.tgz ├── tIDGPredict.sources.tgz ├── tNDPPP-bda.MS.tgz ├── tNDPPP-generic-skymodel.txt ├── tNDPPP-generic.MS.tgz ├── tNDPPP.in_MS.tgz ├── tNDPPP_bda.in_MS.tgz └── tOSKAR.in_MS.tgz ├── scripts ├── DPPP-deprecation.sh ├── junit-merge.py ├── run-format.sh ├── test │ ├── testconfig.py.in │ └── utils.py └── unittests.sh.in ├── setup.py └── steps ├── AOFlaggerStep.cc ├── AOFlaggerStep.h ├── AntennaFlagger.cc ├── AntennaFlagger.h ├── ApplyBeam.cc ├── ApplyBeam.h ├── ApplyCal.cc ├── ApplyCal.h ├── Averager.cc ├── Averager.h ├── BDAAverager.cc ├── BDAAverager.h ├── BDAResultStep.h ├── BdaDdeCal.cc ├── BdaDdeCal.h ├── BdaExpander.cc ├── BdaExpander.h ├── BdaGroupPredict.cc ├── BdaGroupPredict.h ├── Clipper.cc ├── Clipper.h ├── Combine.cc ├── Combine.h ├── Counter.cc ├── Counter.h ├── DDECal.cc ├── DDECal.h ├── Demixer.cc ├── Demixer.h ├── DummyStep.cc ├── DummyStep.h ├── FastPredict.cc ├── FastPredict.h ├── Filter.cc ├── Filter.h ├── FlagTransfer.cc ├── FlagTransfer.h ├── GainCal.cc ├── GainCal.h ├── H5ParmPredict.cc ├── H5ParmPredict.h ├── IDGImager.cc ├── IDGImager.h ├── IDGPredict.cc ├── IDGPredict.h ├── InputStep.cc ├── InputStep.h ├── Interpolate.cc ├── Interpolate.h ├── MSBDAReader.cc ├── MSBDAReader.h ├── MSBDAWriter.cc ├── MSBDAWriter.h ├── MSUpdater.cc ├── MSUpdater.h ├── MSWriter.cc ├── MSWriter.h ├── MadFlagger.cc ├── MadFlagger.h ├── MsColumnReader.cc ├── MsColumnReader.h ├── MsReader.cc ├── MsReader.h ├── MultiMsReader.cc ├── MultiMsReader.h ├── MultiResultStep.cc ├── MultiResultStep.h ├── NullStep.h ├── NullStokes.cc ├── NullStokes.h ├── OneApplyCal.cc ├── OneApplyCal.h ├── OnePredict.cc ├── OnePredict.h ├── OutputStep.h ├── PhaseShift.cc ├── PhaseShift.h ├── PreFlagger.cc ├── PreFlagger.h ├── Predict.cc ├── Predict.h ├── ResultStep.cc ├── ResultStep.h ├── SVPInput.cc ├── SVPInput.h ├── SagecalPredict.cc ├── SagecalPredict.h ├── ScaleData.cc ├── ScaleData.h ├── SetBeam.cc ├── SetBeam.h ├── Split.cc ├── Split.h ├── StationAdder.cc ├── StationAdder.h ├── Step.cc ├── Transfer.cc ├── Transfer.h ├── UVWFlagger.cc ├── UVWFlagger.h ├── Upsample.cc ├── Upsample.h ├── WGridderPredict.cc ├── WGridderPredict.h ├── WSCleanWriter.cc ├── WSCleanWriter.h └── test ├── integration ├── CMakeLists.txt ├── findenv.run_tmpl ├── tApplyBeam.py ├── tApplyBeam.tab.tgz ├── tApplyBeam_ref ├── tApplyCal2.parmdb.tgz ├── tApplyCal2.py ├── tBdaExpander.py ├── tBdaPredict.py ├── tClipper.py ├── tColumnReader.py ├── tCombine.py ├── tDemix.py ├── tFilter.py ├── tFlagTransfer.py ├── tGainCal.py ├── tGainCal.tab.tgz ├── tGainCalH5Parm.py ├── tGainCal_ref ├── tIDGImager.py ├── tMsIn.py ├── tMsOut.py ├── tMultiApplyCal.py ├── tNullStokes.py ├── tPhaseshiftPredict.py ├── tPredict.py ├── tPredict.tab.tgz ├── tPredict_ref ├── tPredict_ref_skymodel ├── tReadOnly.py ├── tSVPInput.py ├── tSagecalPredict.py ├── tSagecalPredict.tab.tgz ├── tSplit.py ├── tTransfer.py ├── tUVWFlagger.py ├── tWGridderPredict.py └── tWSCleanWriter.py └── unit ├── H5ParmFixture.h ├── mock ├── MockInput.cc ├── MockInput.h ├── MockStep.cc ├── MockStep.h ├── ThrowStep.cc └── ThrowStep.h ├── tAOFlaggerStep.cc ├── tAntennaFlagger.cc ├── tApplyBeam.cc ├── tApplyCal.cc ├── tApplyCalH5.cc ├── tAverager.cc ├── tBDAAverager.cc ├── tBDAResultStep.cc ├── tBdaDdeCal.cc ├── tBdaExpander.cc ├── tBdaGroupPredict.cc ├── tClipper.cc ├── tCounter.cc ├── tDDECal.cc ├── tDdeCalCommon.h ├── tDemixer.cc ├── tDummyStep.cc ├── tFastPredict.cc ├── tFilter.cc ├── tFlagTransfer.cc ├── tGainCal.cc ├── tH5ParmPredict.cc ├── tIDGImager.cc ├── tIDGPredict.cc ├── tInputStep.cc ├── tInterpolate.cc ├── tMSBDAReader.cc ├── tMSBDAWriter.cc ├── tMSReader.cc ├── tMSUpdater.cc ├── tMSWriter.cc ├── tMadFlagger.cc ├── tMsColumnReader.cc ├── tNullStokes.cc ├── tOneApplyCal.cc ├── tOnePredict.cc ├── tPSet.cc ├── tPhaseShift.cc ├── tPreFlagger.cc ├── tPredict.h ├── tScaleData.cc ├── tScaleDataBDA.cc ├── tSplit.cc ├── tStationAdder.cc ├── tStepCommon.cc ├── tStepCommon.h ├── tTransfer.cc ├── tUVWFlagger.cc ├── tUpsample.cc └── tWGridderPredict.cc /.clang-format: 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