├── .Rbuildignore ├── .github ├── .gitignore ├── ISSUE_TEMPLATE │ └── bug_report.md └── workflows │ ├── R-CMD-check.yaml │ ├── lint-changed-files.yaml │ └── pkgdown.yaml ├── .gitignore ├── DESCRIPTION ├── HTLR.Rproj ├── LICENSE ├── NAMESPACE ├── NEWS.md ├── R ├── RcppExports.R ├── bcbcsf.r ├── compred.r ├── core.r ├── data.R ├── gendata.r ├── htlr.R ├── initial-state.R ├── lassorda.r ├── mccoef.r ├── order.r ├── predict.R ├── std.R └── util.r ├── README.Rmd ├── README.md ├── data-raw ├── HoCS_test_data.csv ├── HoCS_train_data.csv ├── diabetes.csv ├── pre_diabetes.R └── prostate.rda ├── data ├── colon.rda └── diabetes392.rda ├── inst ├── CITATION └── install_old_htlr.R ├── man ├── HTLR-package.Rd ├── as.matrix.htlr.fit.Rd ├── bcbcsf_deltas.Rd ├── colon.Rd ├── diabetes392.Rd ├── evaluate_pred.Rd ├── figures │ └── README-pressure-1.png ├── gendata_FAM.Rd ├── gendata_MLR.Rd ├── htlr.Rd ├── htlr_fit.Rd ├── htlr_predict.Rd ├── htlr_prior.Rd ├── lasso_deltas.Rd ├── nzero_idx.Rd ├── 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