├── README.md ├── dataset ├── DTI │ ├── adj_DTI.txt │ └── readme.txt ├── SL │ ├── SynLethDB │ │ ├── adj.txt │ │ ├── interaction.mat │ │ └── readme.txt │ └── readme.txt └── readme.txt ├── pretrain_drug ├── data │ └── id_smiles.txt ├── dataloader.py ├── fine_tuning.py ├── inits.py ├── models │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-37.pyc │ │ ├── base_gattn.cpython-37.pyc │ │ ├── base_model.cpython-37.pyc │ │ ├── bert.cpython-37.pyc │ │ ├── gat.cpython-37.pyc │ │ ├── gcn.cpython-37.pyc │ │ ├── layer_norm_residual_conn.cpython-37.pyc │ │ ├── mgcn.cpython-37.pyc │ │ ├── multi_head_attention.cpython-37.pyc │ │ ├── poistion_wise_feed_forward.cpython-37.pyc │ │ └── sp_gat.cpython-37.pyc │ └── mgcn.py ├── pretrain.py ├── readme.txt ├── transformer_model.py └── utils │ └── layers.py └── pretrain_protein ├── data ├── SynLethDB │ ├── adj.txt │ ├── interaction.mat │ └── readme.txt └── readme.txt ├── inits.py ├── metrics.py ├── model.py ├── models ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-37.pyc │ ├── base_gattn.cpython-37.pyc │ ├── base_model.cpython-37.pyc │ ├── bert.cpython-37.pyc │ ├── gat.cpython-37.pyc │ ├── gcn.cpython-37.pyc │ ├── layer_norm_residual_conn.cpython-37.pyc │ ├── multi_head_attention.cpython-37.pyc │ ├── poistion_wise_feed_forward.cpython-37.pyc │ └── sp_gat.cpython-37.pyc └── gcn.py ├── pretrain.py ├── readme.txt └── utils └── layers.py /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/longyahui/PT-GNN/HEAD/README.md -------------------------------------------------------------------------------- /dataset/DTI/adj_DTI.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/longyahui/PT-GNN/HEAD/dataset/DTI/adj_DTI.txt -------------------------------------------------------------------------------- /dataset/DTI/readme.txt: 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