├── .gitignore ├── .travis.yml ├── CITATION.bib ├── CITATION.cff ├── LICENSE ├── Makefile ├── Matlab ├── .gitignore ├── demo.m ├── demo_data │ ├── sample_data.mat │ ├── sample_mask.hdr │ └── sample_mask.img └── functionalDimensionality │ ├── functional_dimensionality.m │ ├── get_residuals_mat.m │ ├── hierarchical_bayes_stan │ ├── hierarchical_bayes_stan.m │ ├── make_components.m │ ├── reconstruct.m │ ├── roi_estimate_dim.m │ ├── searchlight_estimate_dim.m │ └── svd_nested_crossval.m ├── Python └── FunctionalDimensionality │ ├── .coveragerc │ ├── .gitignore │ ├── COPYING │ ├── MANIFEST.in │ ├── README.rst │ ├── demos │ ├── demo_data │ │ ├── .gitignore │ │ └── sample_data.npy │ ├── demo_real_data.py │ └── demo_sim_data.py │ ├── funcdim │ ├── .gitignore │ ├── __init__.py │ ├── crossval.py │ ├── funcdim.py │ └── util.py │ ├── requirements.txt │ ├── setup.py │ └── tests │ ├── .gitignore │ ├── README.md │ ├── output.py │ └── test.py └── README.md /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/.gitignore -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/.travis.yml -------------------------------------------------------------------------------- /CITATION.bib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/CITATION.bib -------------------------------------------------------------------------------- /CITATION.cff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/CITATION.cff -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/LICENSE -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Makefile -------------------------------------------------------------------------------- /Matlab/.gitignore: -------------------------------------------------------------------------------- 1 | *.csv 2 | 3 | -------------------------------------------------------------------------------- /Matlab/demo.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Matlab/demo.m -------------------------------------------------------------------------------- /Matlab/demo_data/sample_data.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Matlab/demo_data/sample_data.mat -------------------------------------------------------------------------------- /Matlab/demo_data/sample_mask.hdr: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Matlab/demo_data/sample_mask.hdr -------------------------------------------------------------------------------- /Matlab/demo_data/sample_mask.img: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Matlab/demo_data/sample_mask.img -------------------------------------------------------------------------------- /Matlab/functionalDimensionality/functional_dimensionality.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Matlab/functionalDimensionality/functional_dimensionality.m -------------------------------------------------------------------------------- /Matlab/functionalDimensionality/get_residuals_mat.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Matlab/functionalDimensionality/get_residuals_mat.m -------------------------------------------------------------------------------- /Matlab/functionalDimensionality/hierarchical_bayes_stan: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Matlab/functionalDimensionality/hierarchical_bayes_stan -------------------------------------------------------------------------------- /Matlab/functionalDimensionality/hierarchical_bayes_stan.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Matlab/functionalDimensionality/hierarchical_bayes_stan.m -------------------------------------------------------------------------------- /Matlab/functionalDimensionality/make_components.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Matlab/functionalDimensionality/make_components.m -------------------------------------------------------------------------------- /Matlab/functionalDimensionality/reconstruct.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Matlab/functionalDimensionality/reconstruct.m -------------------------------------------------------------------------------- /Matlab/functionalDimensionality/roi_estimate_dim.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Matlab/functionalDimensionality/roi_estimate_dim.m -------------------------------------------------------------------------------- /Matlab/functionalDimensionality/searchlight_estimate_dim.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Matlab/functionalDimensionality/searchlight_estimate_dim.m -------------------------------------------------------------------------------- /Matlab/functionalDimensionality/svd_nested_crossval.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Matlab/functionalDimensionality/svd_nested_crossval.m -------------------------------------------------------------------------------- /Python/FunctionalDimensionality/.coveragerc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Python/FunctionalDimensionality/.coveragerc -------------------------------------------------------------------------------- /Python/FunctionalDimensionality/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Python/FunctionalDimensionality/.gitignore -------------------------------------------------------------------------------- /Python/FunctionalDimensionality/COPYING: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Python/FunctionalDimensionality/COPYING -------------------------------------------------------------------------------- /Python/FunctionalDimensionality/MANIFEST.in: -------------------------------------------------------------------------------- 1 | include README.rst 2 | -------------------------------------------------------------------------------- /Python/FunctionalDimensionality/README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Python/FunctionalDimensionality/README.rst -------------------------------------------------------------------------------- /Python/FunctionalDimensionality/demos/demo_data/.gitignore: -------------------------------------------------------------------------------- 1 | *.csv 2 | -------------------------------------------------------------------------------- /Python/FunctionalDimensionality/demos/demo_data/sample_data.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Python/FunctionalDimensionality/demos/demo_data/sample_data.npy -------------------------------------------------------------------------------- /Python/FunctionalDimensionality/demos/demo_real_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Python/FunctionalDimensionality/demos/demo_real_data.py -------------------------------------------------------------------------------- /Python/FunctionalDimensionality/demos/demo_sim_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Python/FunctionalDimensionality/demos/demo_sim_data.py -------------------------------------------------------------------------------- /Python/FunctionalDimensionality/funcdim/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Python/FunctionalDimensionality/funcdim/.gitignore -------------------------------------------------------------------------------- /Python/FunctionalDimensionality/funcdim/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Python/FunctionalDimensionality/funcdim/__init__.py -------------------------------------------------------------------------------- /Python/FunctionalDimensionality/funcdim/crossval.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Python/FunctionalDimensionality/funcdim/crossval.py -------------------------------------------------------------------------------- /Python/FunctionalDimensionality/funcdim/funcdim.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Python/FunctionalDimensionality/funcdim/funcdim.py -------------------------------------------------------------------------------- /Python/FunctionalDimensionality/funcdim/util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Python/FunctionalDimensionality/funcdim/util.py -------------------------------------------------------------------------------- /Python/FunctionalDimensionality/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Python/FunctionalDimensionality/requirements.txt -------------------------------------------------------------------------------- /Python/FunctionalDimensionality/setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Python/FunctionalDimensionality/setup.py -------------------------------------------------------------------------------- /Python/FunctionalDimensionality/tests/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Python/FunctionalDimensionality/tests/.gitignore -------------------------------------------------------------------------------- /Python/FunctionalDimensionality/tests/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Python/FunctionalDimensionality/tests/README.md -------------------------------------------------------------------------------- /Python/FunctionalDimensionality/tests/output.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Python/FunctionalDimensionality/tests/output.py -------------------------------------------------------------------------------- /Python/FunctionalDimensionality/tests/test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/Python/FunctionalDimensionality/tests/test.py -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lovelabUCL/dimensionality/HEAD/README.md --------------------------------------------------------------------------------