├── .github └── workflows │ ├── linting.yml │ └── test.yml ├── .gitignore ├── .pre-commit-config.yaml ├── LICENSE.md ├── README.md ├── notebooks ├── unet_segmentation_metrics-napari.ipynb └── unet_segmentation_metrics.ipynb ├── pyproject.toml ├── src └── umetrix │ ├── __init__.py │ ├── core.py │ ├── notebooks.py │ └── render.py └── tests ├── conftest.py ├── data └── unet.tif └── test_metrics.py /.github/workflows/linting.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lowe-lab-ucl/unet_segmentation_metrics/HEAD/.github/workflows/linting.yml -------------------------------------------------------------------------------- /.github/workflows/test.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lowe-lab-ucl/unet_segmentation_metrics/HEAD/.github/workflows/test.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lowe-lab-ucl/unet_segmentation_metrics/HEAD/.gitignore -------------------------------------------------------------------------------- /.pre-commit-config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lowe-lab-ucl/unet_segmentation_metrics/HEAD/.pre-commit-config.yaml -------------------------------------------------------------------------------- /LICENSE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lowe-lab-ucl/unet_segmentation_metrics/HEAD/LICENSE.md -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lowe-lab-ucl/unet_segmentation_metrics/HEAD/README.md -------------------------------------------------------------------------------- /notebooks/unet_segmentation_metrics-napari.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lowe-lab-ucl/unet_segmentation_metrics/HEAD/notebooks/unet_segmentation_metrics-napari.ipynb -------------------------------------------------------------------------------- /notebooks/unet_segmentation_metrics.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lowe-lab-ucl/unet_segmentation_metrics/HEAD/notebooks/unet_segmentation_metrics.ipynb -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lowe-lab-ucl/unet_segmentation_metrics/HEAD/pyproject.toml -------------------------------------------------------------------------------- /src/umetrix/__init__.py: -------------------------------------------------------------------------------- 1 | from .core import calculate, batch # NOQA: F401 2 | -------------------------------------------------------------------------------- /src/umetrix/core.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lowe-lab-ucl/unet_segmentation_metrics/HEAD/src/umetrix/core.py -------------------------------------------------------------------------------- /src/umetrix/notebooks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lowe-lab-ucl/unet_segmentation_metrics/HEAD/src/umetrix/notebooks.py -------------------------------------------------------------------------------- /src/umetrix/render.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lowe-lab-ucl/unet_segmentation_metrics/HEAD/src/umetrix/render.py -------------------------------------------------------------------------------- /tests/conftest.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lowe-lab-ucl/unet_segmentation_metrics/HEAD/tests/conftest.py -------------------------------------------------------------------------------- /tests/data/unet.tif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lowe-lab-ucl/unet_segmentation_metrics/HEAD/tests/data/unet.tif -------------------------------------------------------------------------------- /tests/test_metrics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lowe-lab-ucl/unet_segmentation_metrics/HEAD/tests/test_metrics.py --------------------------------------------------------------------------------