├── .gitignore ├── .travis.yml ├── LICENSE ├── README.md ├── Snakefile ├── data ├── .gitignore └── Snakefile ├── environment.yml └── src ├── assets └── SigMa-overview.jpg ├── constants.py ├── convert_patient_names.py ├── create_fig.py ├── data_utils.py ├── models ├── HMM.py ├── MMMFrozenEmissions.py ├── MultinomialMixtureModel.py └── SigMa.py ├── process_cosmic_signatures.py ├── process_mutations_for_sigma.py └── train_and_predict.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lrgr/sigma/HEAD/.gitignore -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lrgr/sigma/HEAD/.travis.yml -------------------------------------------------------------------------------- /LICENSE: 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