├── .github ├── workflows │ └── awesome-lint.yml └── ISSUE_TEMPLATE │ ├── link-change.md │ └── new-link.md ├── CONTRIBUTING.md ├── README.md ├── code-of-conduct.md └── LICENSE /.github/workflows/awesome-lint.yml: -------------------------------------------------------------------------------- 1 | name: CI 2 | on: [push, pull_request] 3 | jobs: 4 | Awesome_Lint: 5 | runs-on: ubuntu-latest 6 | steps: 7 | - uses: actions/checkout@v2 8 | with: 9 | fetch-depth: 0 10 | - run: npx awesome-lint 11 | -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/link-change.md: -------------------------------------------------------------------------------- 1 | --- 2 | name: Link change 3 | about: Broken link? Miscategorized? Other changes? 4 | title: "[MODIFY LINK]" 5 | labels: Modify link 6 | assignees: '' 7 | 8 | --- 9 | 10 | **Describe the link** 11 | A clear and concise description of what the existing link is or should be. 12 | 13 | **The change** 14 | What needs to be changed? 15 | -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/new-link.md: -------------------------------------------------------------------------------- 1 | --- 2 | name: New link 3 | about: Suggest a new awesome link 4 | title: "[NEW LINK]" 5 | labels: New link 6 | assignees: '' 7 | 8 | --- 9 | 10 | # Checklist 11 | 12 | * [ ] The link is not in the awesome list already 13 | * [ ] I filled out all the required sections below 14 | 15 | # Required questions 16 | 17 | * What is the name of the educational link? 18 | * What is the URL? 19 | * What makes this awesome (describe it) in one sentence? Do not give a wall of text. 20 | * What is the category that you'd like this link under? 21 | 22 | # Optional questions 23 | 24 | * Provide any other information on this resource 25 | -------------------------------------------------------------------------------- /CONTRIBUTING.md: -------------------------------------------------------------------------------- 1 | # Contribution Guidelines 2 | 3 | Please note that this project is released with a [Contributor Code of Conduct](code-of-conduct.md). By participating in this project you agree to abide by its terms. 4 | 5 | ## Adding an awesome list 6 | 7 | Please ensure your pull request adheres to the [list guidelines](pull_request_template.md). 8 | 9 | ## Adding something to an awesome list 10 | 11 | If you have something awesome to contribute to an awesome list, this is how you do it. 12 | 13 | You'll need a [GitHub account](https://github.com/join)! 14 | 15 | 1. Access the awesome list's GitHub page. For example: https://github.com/sindresorhus/awesome 16 | 2. Click on the `readme.md` file: ![Step 2 Click on Readme.md](https://cloud.githubusercontent.com/assets/170270/9402920/53a7e3ea-480c-11e5-9d81-aecf64be55eb.png) 17 | 3. Now click on the edit icon. ![Step 3 - Click on Edit](https://cloud.githubusercontent.com/assets/170270/9402927/6506af22-480c-11e5-8c18-7ea823530099.png) 18 | 4. You can start editing the text of the file in the in-browser editor. Make sure you follow guidelines above. You can use [GitHub Flavored Markdown](https://help.github.com/articles/github-flavored-markdown/). ![Step 4 - Edit the file](https://cloud.githubusercontent.com/assets/170270/9402932/7301c3a0-480c-11e5-81f5-7e343b71674f.png) 19 | 5. Say why you're proposing the changes, and then click on "Propose file change". ![Step 5 - Propose Changes](https://cloud.githubusercontent.com/assets/170270/9402937/7dd0652a-480c-11e5-9138-bd14244593d5.png) 20 | 6. Submit the [pull request](https://help.github.com/articles/using-pull-requests/)! 21 | 22 | ## Updating your Pull Request 23 | 24 | Sometimes, a maintainer of an awesome list will ask you to edit your Pull Request before it is included. This is normally due to spelling errors or because your PR didn't match the awesome-* list guidelines. 25 | 26 | [Here](https://github.com/RichardLitt/knowledge/blob/master/github/amending-a-commit-guide.md) is a write up on how to change a Pull Request, and the different ways you can do that. 27 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | 2 | # Awesome Bioinformatics Jobs [![Awesome](https://awesome.re/badge.svg)](https://awesome.re) 3 | 4 | A curated list of resources specific to applying to jobs in bioinformatics. 5 | I appreciate any help! For contributing, please see [CONTRIBUTING.md](CONTRIBUTING.md). 6 | 7 | _NOTE_: This list does not reflect any personal or professional bias or opinions. This is a nonexhaustive list and I appreciate any relevant contributions. 8 | 9 | ## Contents 10 | 11 | * [General](#general) 12 | * [Fellowships](#fellowships) 13 | * [Subfields](#subfields) 14 | * [Regional](#regional) 15 | 16 | ## General 17 | 18 | * [PHEC](https://apps.sph.emory.edu/PHEC) - Emory University's Public Health Employment Connection. 19 | * [ISCB](https://www.iscb.org/) - International Society for Computational Biology. 20 | * [bioinformatics.org](https://www.bioinformatics.org/jobs) 21 | * [BioStars](https://www.biostars.org/t/jobs) 22 | * [ASM](https://www.asmcareerconnections.org/) - American Society for Microbiology career connections. Despite the name, there are international listings. 23 | * [APHL](https://careers.aphl.org/) - Laboratory careers with Association of Public Health Laboratories. 24 | * [Genomic Epi Jobs](https://www.genomicepi.com/jobs.html) - Crowdsourced genomic epi genomes on Krisandra Allen's site. 25 | 26 | ### Contracting companies 27 | 28 | * [Booz|Allen|Hamilton](https://careers.boozallen.com) 29 | * [Battelle](https://www.battelle.org/careers) 30 | * [Leidos](https://careers.leidos.com) 31 | * [IHRC](https://www.ihrc.com/Careers/Join-Us) 32 | * [ASRT](https://www.asrtinc.com/careers) 33 | 34 | ## Fellowships 35 | 36 | * [ORISE](https://orise.orau.gov/cdc) - Fellowships funded by Oak Ridge National Labs. 37 | * [APHL-CDC Bioinformatics Fellowship](https://www.aphl.org/fellowships/pages/bioinformatics.aspx) 38 | 39 | ## Subfields 40 | 41 | Help wanted: third party testing labs and food companies 42 | 43 | Help wanted: hospitals or non-profit organizations such as health-related data 44 | 45 | Help wanted: biosciences/biotech companies 46 | 47 | Help wanted: academia 48 | 49 | ## Regional 50 | 51 | ### Germany 52 | 53 | * [FaBI](https://bioinformatik.de/) 54 | * [Zeit Online](http://jobs.zeit.de) 55 | * [Jobs beim Staat](https://www.jobs-beim-staat.de) 56 | 57 | ### Sweden 58 | 59 | * [SciLifeLab](https://www.scilifelab.se/careers/) 60 | 61 | ### United States 62 | 63 | * [USA jobs](https://www.usajobs.gov) 64 | 65 | ### France 66 | 67 | * [SFBI](https://www.sfbi.fr/) 68 | -------------------------------------------------------------------------------- /code-of-conduct.md: -------------------------------------------------------------------------------- 1 | # Contributor Covenant Code of Conduct 2 | 3 | ## Our Pledge 4 | 5 | In the interest of fostering an open and welcoming environment, we as 6 | contributors and maintainers pledge to making participation in our project and 7 | our community a harassment-free experience for everyone, regardless of age, body 8 | size, disability, ethnicity, gender identity and expression, level of experience, 9 | nationality, personal appearance, race, religion, or sexual identity and 10 | orientation. 11 | 12 | ## Our Standards 13 | 14 | Examples of behavior that contributes to creating a positive environment 15 | include: 16 | 17 | * Using welcoming and inclusive language 18 | * Being respectful of differing viewpoints and experiences 19 | * Gracefully accepting constructive criticism 20 | * Focusing on what is best for the community 21 | * Showing empathy towards other community members 22 | 23 | Examples of unacceptable behavior by participants include: 24 | 25 | * The use of sexualized language or imagery and unwelcome sexual attention or 26 | advances 27 | * Trolling, insulting/derogatory comments, and personal or political attacks 28 | * Public or private harassment 29 | * Publishing others' private information, such as a physical or electronic 30 | address, without explicit permission 31 | * Other conduct which could reasonably be considered inappropriate in a 32 | professional setting 33 | 34 | ## Our Responsibilities 35 | 36 | Project maintainers are responsible for clarifying the standards of acceptable 37 | behavior and are expected to take appropriate and fair corrective action in 38 | response to any instances of unacceptable behavior. 39 | 40 | Project maintainers have the right and responsibility to remove, edit, or 41 | reject comments, commits, code, wiki edits, issues, and other contributions 42 | that are not aligned to this Code of Conduct, or to ban temporarily or 43 | permanently any contributor for other behaviors that they deem inappropriate, 44 | threatening, offensive, or harmful. 45 | 46 | ## Scope 47 | 48 | This Code of Conduct applies both within project spaces and in public spaces 49 | when an individual is representing the project or its community. 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