├── .Rbuildignore ├── .github ├── .gitignore ├── .gitkeep ├── AGENTS.md ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md └── workflows │ ├── .gitkeep │ ├── pkgdown.yaml │ └── r-cmd-check.yaml ├── .gitignore ├── .markdownlint-cli2.jsonc ├── DESCRIPTION ├── LICENSE ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── check_connection.R ├── check_micromamba_version.R ├── clean_cache.R ├── condathis-package.R ├── create_base_env.R ├── create_env.R ├── define_platform.R ├── env_exists.R ├── format_channels_args.R ├── get_best_micromamba_path.R ├── get_condathis_path.R ├── get_env_dir.R ├── get_install_dir.R ├── get_micromamba_version.R ├── get_sys_arch.R ├── install_micromamba.R ├── install_packages.R ├── is_micromamba_available.R ├── is_micromamba_version_available.R ├── list_envs.R ├── list_packages.R ├── micromamba_bin_path.R ├── micromamba_user_installed.R ├── native_cmd.R ├── packages_search_native.R ├── parse_output.R ├── parse_quiet_flag.R ├── parse_strategy_channel_priority.R ├── parse_strategy_verbose.R ├── remove_env.R ├── rethrow_error_cmd.R ├── rethrow_error_run.R ├── run.R ├── run_bin.R ├── run_internal_native.R ├── symlink_micromamba_bin.R └── with_sandbox_dir.R ├── README.md ├── README.qmd ├── _pkgdown.yml ├── condathis.Rproj ├── cran-comments.md ├── data-raw ├── .gitkeep ├── condathis-logo.svg └── example-vignette-article-quarto.qmd ├── inst └── extdata │ ├── example.bam │ ├── sample1_L001_R1_001.fastq.gz │ ├── sample1_L001_R2_001.fastq.gz │ ├── sample2_L001_R1_001.fastq.gz │ ├── sample2_L001_R2_001.fastq.gz │ └── stat-env.yml ├── justfile ├── man ├── clean_cache.Rd ├── condathis-package.Rd ├── create_env.Rd ├── env_exists.Rd ├── figures │ ├── logo.png │ └── logo.svg ├── get_env_dir.Rd ├── get_install_dir.Rd ├── get_sys_arch.Rd ├── install_micromamba.Rd ├── install_packages.Rd ├── list_envs.Rd ├── list_packages.Rd ├── micromamba_bin_path.Rd ├── parse_output.Rd ├── remove_env.Rd ├── run.Rd ├── run_bin.Rd └── with_sandbox_dir.Rd ├── pkgdown └── favicon │ ├── apple-touch-icon.png │ ├── favicon-96x96.png │ ├── favicon.ico │ ├── favicon.svg │ ├── site.webmanifest │ ├── web-app-manifest-192x192.png │ └── web-app-manifest-512x512.png ├── tests ├── testthat.R └── testthat │ ├── setup.R │ ├── test-check_connection.R │ ├── test-clean_cache.R │ ├── test-create_base_env.R │ ├── test-create_env.R │ ├── test-create_nested_env.R │ ├── test-env_exists.R │ ├── test-format_channels_args.R │ ├── test-get_env_dir.R │ ├── test-get_install_dir.R │ ├── test-get_sys_arch.R │ ├── test-install_micromamba.R │ ├── test-is_micromamba_available_for_arch.R │ ├── test-list_packages.R │ ├── test-micromamba_bin_path.R │ ├── test-micromamba_user_installed.R │ ├── test-native_cmd.R │ ├── test-parse_output.R │ ├── test-parse_strategy_channel_priority.R │ ├── test-parse_strategy_verbose.R │ ├── test-remove_env.R │ ├── test-rethrow_error.R │ ├── test-run.R │ ├── test-run_bin.R │ ├── test-run_output_file.R │ └── test-run_verbose_levels.R └── vignettes ├── .gitignore ├── articles ├── .gitignore └── condathis-intro.qmd └── condathis.qmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | -------------------------------------------------------------------------------- /.github/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /.github/AGENTS.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/.github/AGENTS.md -------------------------------------------------------------------------------- /.github/CODE_OF_CONDUCT.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/.github/CODE_OF_CONDUCT.md -------------------------------------------------------------------------------- /.github/CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/.github/CONTRIBUTING.md -------------------------------------------------------------------------------- /.github/workflows/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /.github/workflows/pkgdown.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/.github/workflows/pkgdown.yaml -------------------------------------------------------------------------------- /.github/workflows/r-cmd-check.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/.github/workflows/r-cmd-check.yaml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/.gitignore -------------------------------------------------------------------------------- /.markdownlint-cli2.jsonc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/.markdownlint-cli2.jsonc -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | YEAR: 2024 2 | COPYRIGHT HOLDER: condathis authors 3 | -------------------------------------------------------------------------------- /LICENSE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/LICENSE.md -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/NAMESPACE -------------------------------------------------------------------------------- /NEWS.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/NEWS.md -------------------------------------------------------------------------------- /R/check_connection.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/check_connection.R -------------------------------------------------------------------------------- /R/check_micromamba_version.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/check_micromamba_version.R -------------------------------------------------------------------------------- /R/clean_cache.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/clean_cache.R -------------------------------------------------------------------------------- /R/condathis-package.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/condathis-package.R -------------------------------------------------------------------------------- /R/create_base_env.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/create_base_env.R -------------------------------------------------------------------------------- /R/create_env.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/create_env.R -------------------------------------------------------------------------------- /R/define_platform.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/define_platform.R -------------------------------------------------------------------------------- /R/env_exists.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/env_exists.R -------------------------------------------------------------------------------- /R/format_channels_args.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/format_channels_args.R -------------------------------------------------------------------------------- /R/get_best_micromamba_path.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/get_best_micromamba_path.R -------------------------------------------------------------------------------- /R/get_condathis_path.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/get_condathis_path.R -------------------------------------------------------------------------------- /R/get_env_dir.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/get_env_dir.R -------------------------------------------------------------------------------- /R/get_install_dir.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/get_install_dir.R -------------------------------------------------------------------------------- /R/get_micromamba_version.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/get_micromamba_version.R -------------------------------------------------------------------------------- /R/get_sys_arch.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/get_sys_arch.R -------------------------------------------------------------------------------- /R/install_micromamba.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/install_micromamba.R -------------------------------------------------------------------------------- /R/install_packages.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/install_packages.R -------------------------------------------------------------------------------- /R/is_micromamba_available.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/is_micromamba_available.R -------------------------------------------------------------------------------- /R/is_micromamba_version_available.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/is_micromamba_version_available.R -------------------------------------------------------------------------------- /R/list_envs.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/list_envs.R -------------------------------------------------------------------------------- /R/list_packages.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/list_packages.R -------------------------------------------------------------------------------- /R/micromamba_bin_path.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/micromamba_bin_path.R -------------------------------------------------------------------------------- /R/micromamba_user_installed.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/micromamba_user_installed.R -------------------------------------------------------------------------------- /R/native_cmd.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/native_cmd.R -------------------------------------------------------------------------------- /R/packages_search_native.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/packages_search_native.R -------------------------------------------------------------------------------- /R/parse_output.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/parse_output.R -------------------------------------------------------------------------------- /R/parse_quiet_flag.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/parse_quiet_flag.R -------------------------------------------------------------------------------- /R/parse_strategy_channel_priority.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/parse_strategy_channel_priority.R -------------------------------------------------------------------------------- /R/parse_strategy_verbose.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/parse_strategy_verbose.R -------------------------------------------------------------------------------- /R/remove_env.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/remove_env.R -------------------------------------------------------------------------------- /R/rethrow_error_cmd.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/rethrow_error_cmd.R -------------------------------------------------------------------------------- /R/rethrow_error_run.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/rethrow_error_run.R -------------------------------------------------------------------------------- /R/run.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/run.R -------------------------------------------------------------------------------- /R/run_bin.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/run_bin.R -------------------------------------------------------------------------------- /R/run_internal_native.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/run_internal_native.R -------------------------------------------------------------------------------- /R/symlink_micromamba_bin.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/symlink_micromamba_bin.R -------------------------------------------------------------------------------- /R/with_sandbox_dir.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/R/with_sandbox_dir.R -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/README.md -------------------------------------------------------------------------------- /README.qmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/README.qmd -------------------------------------------------------------------------------- /_pkgdown.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/_pkgdown.yml -------------------------------------------------------------------------------- /condathis.Rproj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/condathis.Rproj -------------------------------------------------------------------------------- /cran-comments.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/cran-comments.md -------------------------------------------------------------------------------- /data-raw/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /data-raw/condathis-logo.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/data-raw/condathis-logo.svg -------------------------------------------------------------------------------- /data-raw/example-vignette-article-quarto.qmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/data-raw/example-vignette-article-quarto.qmd -------------------------------------------------------------------------------- /inst/extdata/example.bam: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/inst/extdata/example.bam -------------------------------------------------------------------------------- /inst/extdata/sample1_L001_R1_001.fastq.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/inst/extdata/sample1_L001_R1_001.fastq.gz -------------------------------------------------------------------------------- /inst/extdata/sample1_L001_R2_001.fastq.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/inst/extdata/sample1_L001_R2_001.fastq.gz -------------------------------------------------------------------------------- /inst/extdata/sample2_L001_R1_001.fastq.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/inst/extdata/sample2_L001_R1_001.fastq.gz -------------------------------------------------------------------------------- /inst/extdata/sample2_L001_R2_001.fastq.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/inst/extdata/sample2_L001_R2_001.fastq.gz -------------------------------------------------------------------------------- /inst/extdata/stat-env.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/inst/extdata/stat-env.yml -------------------------------------------------------------------------------- /justfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/justfile -------------------------------------------------------------------------------- /man/clean_cache.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/man/clean_cache.Rd -------------------------------------------------------------------------------- /man/condathis-package.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/man/condathis-package.Rd -------------------------------------------------------------------------------- /man/create_env.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/man/create_env.Rd -------------------------------------------------------------------------------- /man/env_exists.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/man/env_exists.Rd -------------------------------------------------------------------------------- /man/figures/logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/man/figures/logo.png -------------------------------------------------------------------------------- /man/figures/logo.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/man/figures/logo.svg -------------------------------------------------------------------------------- /man/get_env_dir.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/man/get_env_dir.Rd -------------------------------------------------------------------------------- /man/get_install_dir.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/man/get_install_dir.Rd -------------------------------------------------------------------------------- /man/get_sys_arch.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/man/get_sys_arch.Rd -------------------------------------------------------------------------------- /man/install_micromamba.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/man/install_micromamba.Rd -------------------------------------------------------------------------------- /man/install_packages.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/man/install_packages.Rd -------------------------------------------------------------------------------- /man/list_envs.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/man/list_envs.Rd -------------------------------------------------------------------------------- /man/list_packages.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/man/list_packages.Rd -------------------------------------------------------------------------------- /man/micromamba_bin_path.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/man/micromamba_bin_path.Rd -------------------------------------------------------------------------------- /man/parse_output.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/man/parse_output.Rd -------------------------------------------------------------------------------- /man/remove_env.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/man/remove_env.Rd -------------------------------------------------------------------------------- /man/run.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/man/run.Rd -------------------------------------------------------------------------------- /man/run_bin.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/man/run_bin.Rd -------------------------------------------------------------------------------- /man/with_sandbox_dir.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/man/with_sandbox_dir.Rd -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/pkgdown/favicon/apple-touch-icon.png -------------------------------------------------------------------------------- /pkgdown/favicon/favicon-96x96.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/pkgdown/favicon/favicon-96x96.png -------------------------------------------------------------------------------- /pkgdown/favicon/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/pkgdown/favicon/favicon.ico -------------------------------------------------------------------------------- /pkgdown/favicon/favicon.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/pkgdown/favicon/favicon.svg -------------------------------------------------------------------------------- /pkgdown/favicon/site.webmanifest: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/pkgdown/favicon/site.webmanifest -------------------------------------------------------------------------------- /pkgdown/favicon/web-app-manifest-192x192.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/pkgdown/favicon/web-app-manifest-192x192.png -------------------------------------------------------------------------------- /pkgdown/favicon/web-app-manifest-512x512.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/pkgdown/favicon/web-app-manifest-512x512.png -------------------------------------------------------------------------------- /tests/testthat.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat.R -------------------------------------------------------------------------------- /tests/testthat/setup.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/setup.R -------------------------------------------------------------------------------- /tests/testthat/test-check_connection.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-check_connection.R -------------------------------------------------------------------------------- /tests/testthat/test-clean_cache.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-clean_cache.R -------------------------------------------------------------------------------- /tests/testthat/test-create_base_env.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-create_base_env.R -------------------------------------------------------------------------------- /tests/testthat/test-create_env.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-create_env.R -------------------------------------------------------------------------------- /tests/testthat/test-create_nested_env.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-create_nested_env.R -------------------------------------------------------------------------------- /tests/testthat/test-env_exists.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-env_exists.R -------------------------------------------------------------------------------- /tests/testthat/test-format_channels_args.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-format_channels_args.R -------------------------------------------------------------------------------- /tests/testthat/test-get_env_dir.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-get_env_dir.R -------------------------------------------------------------------------------- /tests/testthat/test-get_install_dir.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-get_install_dir.R -------------------------------------------------------------------------------- /tests/testthat/test-get_sys_arch.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-get_sys_arch.R -------------------------------------------------------------------------------- /tests/testthat/test-install_micromamba.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-install_micromamba.R -------------------------------------------------------------------------------- /tests/testthat/test-is_micromamba_available_for_arch.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-is_micromamba_available_for_arch.R -------------------------------------------------------------------------------- /tests/testthat/test-list_packages.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-list_packages.R -------------------------------------------------------------------------------- /tests/testthat/test-micromamba_bin_path.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-micromamba_bin_path.R -------------------------------------------------------------------------------- /tests/testthat/test-micromamba_user_installed.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-micromamba_user_installed.R -------------------------------------------------------------------------------- /tests/testthat/test-native_cmd.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-native_cmd.R -------------------------------------------------------------------------------- /tests/testthat/test-parse_output.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-parse_output.R -------------------------------------------------------------------------------- /tests/testthat/test-parse_strategy_channel_priority.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-parse_strategy_channel_priority.R -------------------------------------------------------------------------------- /tests/testthat/test-parse_strategy_verbose.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-parse_strategy_verbose.R -------------------------------------------------------------------------------- /tests/testthat/test-remove_env.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-remove_env.R -------------------------------------------------------------------------------- /tests/testthat/test-rethrow_error.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-rethrow_error.R -------------------------------------------------------------------------------- /tests/testthat/test-run.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-run.R -------------------------------------------------------------------------------- /tests/testthat/test-run_bin.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-run_bin.R -------------------------------------------------------------------------------- /tests/testthat/test-run_output_file.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-run_output_file.R -------------------------------------------------------------------------------- /tests/testthat/test-run_verbose_levels.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/tests/testthat/test-run_verbose_levels.R -------------------------------------------------------------------------------- /vignettes/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/vignettes/.gitignore -------------------------------------------------------------------------------- /vignettes/articles/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/vignettes/articles/.gitignore -------------------------------------------------------------------------------- /vignettes/articles/condathis-intro.qmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/vignettes/articles/condathis-intro.qmd -------------------------------------------------------------------------------- /vignettes/condathis.qmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/luciorq/condathis/HEAD/vignettes/condathis.qmd --------------------------------------------------------------------------------