├── CMT_block.py ├── censnet_block.py ├── convnext.py ├── data ├── 1.png ├── 2.png ├── download.sh ├── gene_names_her2_that_we_think_can_be_predicted.npy ├── genes_her2_that_we_think_can_be_predicted.npy ├── her_hvg_cut_1000.npy ├── skin_hvg_cut_1000.npy ├── spatialLIBD_selected_genes.npy └── spatialLIBD_unfiltered.npy ├── dataloader.py ├── dataset.py ├── draw_graph.py ├── evaluate.py ├── find_number.py ├── gnn_block.py ├── grad_cam.py ├── graph_construction.py ├── heatmap_func.py ├── model.py ├── others ├── dataloader_cscc.py └── dataset.py ├── pretrained ├── This_is_to_load_CMT_parameters_pretrained_on_ImageNet_for_CMT_blocks.txt └── download.sh ├── readme.md ├── real_metric.py ├── record-TCGN ├── download.sh └── readme.md ├── train.py └── transformer_block.py /CMT_block.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lugia-xiao/TCGN/HEAD/CMT_block.py 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/real_metric.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lugia-xiao/TCGN/HEAD/real_metric.py -------------------------------------------------------------------------------- /record-TCGN/download.sh: -------------------------------------------------------------------------------- 1 | wget https://drive.google.com/file/d/19VavhjtDk2Eak8Q75ZhBNVVKtJU_4bBI/view?usp=sharing 2 | -------------------------------------------------------------------------------- /record-TCGN/readme.md: -------------------------------------------------------------------------------- 1 | # Pretrained model on the HER2+ dataset with fold A2 2 | -------------------------------------------------------------------------------- /train.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/lugia-xiao/TCGN/HEAD/train.py 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