├── .gitignore ├── README.md ├── ckpts ├── experiment_1 │ ├── init │ │ ├── train │ │ │ └── init_surf.txt │ │ └── valid │ │ │ └── init_surf.txt │ ├── model │ │ └── saved_model.txt │ └── result │ │ └── pred_surf.txt └── pretrained │ ├── adni │ ├── model_gm_adni_lh_pretrained.pt │ ├── model_gm_adni_rh_pretrained.pt │ ├── model_seg_adni_pretrained.pt │ ├── model_wm_adni_lh_pretrained.pt │ └── model_wm_adni_rh_pretrained.pt │ ├── dhcp │ ├── model_gm_dhcp_lh_pretrained.pt │ ├── model_gm_dhcp_rh_pretrained.pt │ ├── model_seg_dhcp_pretrained.pt │ ├── model_wm_dhcp_lh_pretrained.pt │ └── model_wm_dhcp_rh_pretrained.pt │ └── hcp │ ├── model_gm_hcp_lh_pretrained.pt │ ├── model_gm_hcp_rh_pretrained.pt │ ├── model_seg_hcp_pretrained.pt │ ├── model_wm_hcp_lh_pretrained.pt │ └── model_wm_hcp_rh_pretrained.pt ├── config.py ├── data ├── adni │ ├── test │ │ └── subject_1 │ │ │ ├── mri │ │ │ ├── orig.mgz │ │ │ └── ribbon.mgz │ │ │ └── surf │ │ │ ├── lh.pial │ │ │ └── lh.white │ ├── train │ │ └── your_data.txt │ └── valid │ │ └── your_data.txt ├── dataloader.py ├── preprocess.py └── split │ ├── adni.txt │ ├── dhcp.txt │ └── hcp.txt ├── eval.py ├── figure ├── deform.png ├── diffeo.png └── pipeline.png ├── model └── net.py ├── requirements.txt ├── train.py └── util ├── critical186LUT.raw.gz ├── mesh.py └── tca.py /.gitignore: -------------------------------------------------------------------------------- 1 | .DS_Store 2 | __pycache__ 3 | .ipynb_checkpoints/ 4 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/m-qiang/CortexODE/HEAD/README.md -------------------------------------------------------------------------------- /ckpts/experiment_1/init/train/init_surf.txt: -------------------------------------------------------------------------------- 1 | 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