├── .gitignore ├── FK_2c_example.ipynb ├── FK_DTI_example.ipynb ├── FK_example.ipynb ├── FK_exampleAtlas.ipynb ├── LICENSE ├── README.md ├── TumorGrowthToolkit ├── FK │ ├── FK.py │ └── __init__.py ├── FK_2c │ ├── FK_2c.py │ └── __init__.py ├── FK_DTI │ ├── FK_DTI.py │ ├── __init__.py │ ├── combineHCPBundels.py │ ├── testNewDiffusionStepWithTensor.py │ └── tools.py └── base_solver.py ├── dataset ├── FSL_HCP1065_tensor_1mm_space-HPC-AntsIndexSpace_SRI.nii.gz ├── GM.nii.gz ├── HARDI193_RGB.nii.gz ├── WM.nii.gz └── sub-mni152_tissue-with-antsN4_space-sri.nii.gz ├── figures └── FK_2c.png ├── setup.py ├── synthetic_gens ├── generatePatient_FK_2c.py └── run_gen_FK_2c.py ├── testDTI.py ├── tests └── test_DTI │ ├── testDTI.py │ └── testDTIwithHPC.py └── wishlist.md /.gitignore: -------------------------------------------------------------------------------- 1 | dist/* 2 | *.pyc 3 | *.egg-info 4 | synthetic_gens/* -------------------------------------------------------------------------------- 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