├── LICENSE ├── PFC tutorial.ipynb ├── README.md ├── fasthigashi ├── FastHigashi_Wrapper.py ├── Fast_process.py ├── __init__.py ├── parafac2_intergrative.py ├── parafac_integrative.py ├── partial_rwr.py ├── preprocessing.py ├── project2orthogonal.py ├── sparse_for_schic.py └── util.py ├── figs ├── fig1.png ├── higashi_cellsystems.png └── higashi_title.png └── setup.py /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ma-compbio/Fast-Higashi/HEAD/LICENSE -------------------------------------------------------------------------------- /PFC tutorial.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ma-compbio/Fast-Higashi/HEAD/PFC tutorial.ipynb -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ma-compbio/Fast-Higashi/HEAD/README.md -------------------------------------------------------------------------------- /fasthigashi/FastHigashi_Wrapper.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ma-compbio/Fast-Higashi/HEAD/fasthigashi/FastHigashi_Wrapper.py -------------------------------------------------------------------------------- /fasthigashi/Fast_process.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ma-compbio/Fast-Higashi/HEAD/fasthigashi/Fast_process.py -------------------------------------------------------------------------------- /fasthigashi/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /fasthigashi/parafac2_intergrative.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ma-compbio/Fast-Higashi/HEAD/fasthigashi/parafac2_intergrative.py -------------------------------------------------------------------------------- /fasthigashi/parafac_integrative.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ma-compbio/Fast-Higashi/HEAD/fasthigashi/parafac_integrative.py -------------------------------------------------------------------------------- /fasthigashi/partial_rwr.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ma-compbio/Fast-Higashi/HEAD/fasthigashi/partial_rwr.py -------------------------------------------------------------------------------- /fasthigashi/preprocessing.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ma-compbio/Fast-Higashi/HEAD/fasthigashi/preprocessing.py -------------------------------------------------------------------------------- /fasthigashi/project2orthogonal.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ma-compbio/Fast-Higashi/HEAD/fasthigashi/project2orthogonal.py -------------------------------------------------------------------------------- /fasthigashi/sparse_for_schic.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ma-compbio/Fast-Higashi/HEAD/fasthigashi/sparse_for_schic.py -------------------------------------------------------------------------------- /fasthigashi/util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ma-compbio/Fast-Higashi/HEAD/fasthigashi/util.py -------------------------------------------------------------------------------- /figs/fig1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ma-compbio/Fast-Higashi/HEAD/figs/fig1.png -------------------------------------------------------------------------------- /figs/higashi_cellsystems.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ma-compbio/Fast-Higashi/HEAD/figs/higashi_cellsystems.png -------------------------------------------------------------------------------- /figs/higashi_title.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ma-compbio/Fast-Higashi/HEAD/figs/higashi_title.png -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ma-compbio/Fast-Higashi/HEAD/setup.py --------------------------------------------------------------------------------