├── .gitignore ├── LICENSE ├── README.md ├── Tutorial_with_Higashi.ipynb ├── config.json ├── data ├── hg19.chrom.sizes ├── hg38.chrom.sizes └── mm10.chrom.sizes ├── modules ├── analysis.py ├── clustering.py ├── embedding.py ├── postprocessing.py ├── preprocessing.py └── random_walk.py ├── requirements.txt ├── sample_configs ├── config_GM12878.json ├── config_pfc.json └── config_wtc.json ├── scghost.py ├── scghost_overview.png ├── tutorial.ipynb └── utilities ├── chrom_sizes.py ├── gpu.py ├── helper.py └── parsers.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ma-compbio/scGHOST/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ma-compbio/scGHOST/HEAD/LICENSE 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