├── Fig1 ├── Additional_data │ ├── biomart_mart_export.txt │ ├── color.B.Rdata │ └── genes_black_WYC.rda └── fig1.R ├── Fig2 └── fig2.R ├── Fig3 ├── SCENIC │ ├── .ipynb_checkpoints │ │ └── pySCENIC_hezuo-checkpoint.ipynb │ └── 1-pySCENIC.ipynb └── scATAC │ ├── 0-QC_plot.R │ ├── 1-ArchR_merge.R │ ├── 10_motif_bridge_plot.R │ ├── 2-RNA_integration.R │ ├── 3-peak_calling.R │ ├── 4-motif_devation.R │ ├── 5-motif_enrichment_in_differential_peaks.R │ ├── 6-footprint.R │ ├── 7-peak2GeneLinkage.R │ ├── 8-positive_TF_identify.R │ └── 9_trajectory_analysis.R ├── Fig4 └── fig4.R ├── Fig5 ├── BayesPrism_function.R └── Fig5.R ├── Fig6 └── Fig6.R └── README.md /Fig1/Additional_data/biomart_mart_export.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ma-jq/B/HEAD/Fig1/Additional_data/biomart_mart_export.txt -------------------------------------------------------------------------------- /Fig1/Additional_data/color.B.Rdata: 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