├── .gitignore ├── .travis.yml ├── README.rst ├── igv_plotter ├── LICENSE ├── MANIFEST.in ├── README.rst ├── __init__.py ├── bin │ ├── igv │ ├── igv.jar │ ├── igv_plotter │ └── igvweb_viewer ├── igv_api.py ├── lib │ └── igv.jar ├── setup.py ├── static │ ├── css │ │ ├── font-awesome.min.css │ │ ├── igv-1.0.1.css │ │ ├── img │ │ │ ├── cursor_logo.png │ │ │ ├── cursor_logo.svg │ │ │ └── igv_logo_letters_paths.svg │ │ └── jquery-ui.css │ ├── fonts │ │ ├── fontawesome-webfont.ttf │ │ └── fontawesome-webfont.woff │ ├── img │ │ ├── cursor_logo.png │ │ └── cursor_logo.svg │ └── js │ │ ├── igv-1.0.1.js │ │ ├── igv.js │ │ ├── igv.min.js │ │ ├── igv.min.map │ │ ├── jquery-ui.min.js │ │ └── jquery.min.js ├── tests │ ├── __init__.py │ └── test_igv_api.py └── tox.ini └── igv_server ├── LICENSE ├── README.md ├── add_to_igv_server ├── httpd_server ├── README.rst ├── httpd.conf ├── restart_apache.sh └── scripts │ ├── dataFiles.py │ └── dataServerRegistry.py └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/.gitignore -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/.travis.yml -------------------------------------------------------------------------------- /README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/README.rst -------------------------------------------------------------------------------- /igv_plotter/LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/LICENSE -------------------------------------------------------------------------------- /igv_plotter/MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/MANIFEST.in -------------------------------------------------------------------------------- /igv_plotter/README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/README.rst -------------------------------------------------------------------------------- /igv_plotter/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /igv_plotter/bin/igv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/bin/igv -------------------------------------------------------------------------------- /igv_plotter/bin/igv.jar: -------------------------------------------------------------------------------- 1 | ../lib/igv.jar -------------------------------------------------------------------------------- /igv_plotter/bin/igv_plotter: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/bin/igv_plotter -------------------------------------------------------------------------------- /igv_plotter/bin/igvweb_viewer: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/bin/igvweb_viewer -------------------------------------------------------------------------------- /igv_plotter/igv_api.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/igv_api.py -------------------------------------------------------------------------------- /igv_plotter/lib/igv.jar: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/lib/igv.jar -------------------------------------------------------------------------------- /igv_plotter/setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/setup.py -------------------------------------------------------------------------------- /igv_plotter/static/css/font-awesome.min.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/static/css/font-awesome.min.css -------------------------------------------------------------------------------- /igv_plotter/static/css/igv-1.0.1.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/static/css/igv-1.0.1.css -------------------------------------------------------------------------------- /igv_plotter/static/css/img/cursor_logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/static/css/img/cursor_logo.png -------------------------------------------------------------------------------- /igv_plotter/static/css/img/cursor_logo.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/static/css/img/cursor_logo.svg -------------------------------------------------------------------------------- /igv_plotter/static/css/img/igv_logo_letters_paths.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/static/css/img/igv_logo_letters_paths.svg -------------------------------------------------------------------------------- /igv_plotter/static/css/jquery-ui.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/static/css/jquery-ui.css -------------------------------------------------------------------------------- /igv_plotter/static/fonts/fontawesome-webfont.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/static/fonts/fontawesome-webfont.ttf -------------------------------------------------------------------------------- /igv_plotter/static/fonts/fontawesome-webfont.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/static/fonts/fontawesome-webfont.woff -------------------------------------------------------------------------------- /igv_plotter/static/img/cursor_logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/static/img/cursor_logo.png -------------------------------------------------------------------------------- /igv_plotter/static/img/cursor_logo.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/static/img/cursor_logo.svg -------------------------------------------------------------------------------- /igv_plotter/static/js/igv-1.0.1.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/static/js/igv-1.0.1.js -------------------------------------------------------------------------------- /igv_plotter/static/js/igv.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/static/js/igv.js -------------------------------------------------------------------------------- /igv_plotter/static/js/igv.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/static/js/igv.min.js -------------------------------------------------------------------------------- /igv_plotter/static/js/igv.min.map: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/static/js/igv.min.map -------------------------------------------------------------------------------- /igv_plotter/static/js/jquery-ui.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/static/js/jquery-ui.min.js -------------------------------------------------------------------------------- /igv_plotter/static/js/jquery.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/static/js/jquery.min.js -------------------------------------------------------------------------------- /igv_plotter/tests/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /igv_plotter/tests/test_igv_api.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/tests/test_igv_api.py -------------------------------------------------------------------------------- /igv_plotter/tox.ini: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_plotter/tox.ini -------------------------------------------------------------------------------- /igv_server/LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_server/LICENSE -------------------------------------------------------------------------------- /igv_server/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_server/README.md -------------------------------------------------------------------------------- /igv_server/add_to_igv_server: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_server/add_to_igv_server -------------------------------------------------------------------------------- /igv_server/httpd_server/README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_server/httpd_server/README.rst -------------------------------------------------------------------------------- /igv_server/httpd_server/httpd.conf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_server/httpd_server/httpd.conf -------------------------------------------------------------------------------- /igv_server/httpd_server/restart_apache.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_server/httpd_server/restart_apache.sh -------------------------------------------------------------------------------- /igv_server/httpd_server/scripts/dataFiles.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_server/httpd_server/scripts/dataFiles.py -------------------------------------------------------------------------------- /igv_server/httpd_server/scripts/dataServerRegistry.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_server/httpd_server/scripts/dataServerRegistry.py -------------------------------------------------------------------------------- /igv_server/setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/macarthur-lab/igv_utils/HEAD/igv_server/setup.py --------------------------------------------------------------------------------