├── .gitignore ├── LICENSE.md ├── README.md ├── assets ├── images │ ├── patch-lr.jpg │ └── wsi_zeroshot-lr.jpg └── timm_ctp.tar ├── env.yml └── src ├── data_csvs └── tcga_rcc_zeroshot_example.csv ├── extract_embeddings.py ├── misc ├── constants.py └── transforms.py ├── model_configs ├── ctranspath_448_bioclinicalbert.json └── ctranspath_448_pubmedbert.json ├── models ├── ctran.py ├── factory.py ├── model.py ├── timm_model.py └── utils.py ├── presample_prompts.py ├── prompts ├── __init__.py ├── brca_prompts.json ├── nsclc_prompts.json └── rcc_prompts.json ├── slidelevel_zeroshot_multiprompt.py ├── slidelevel_zeroshot_results └── ctranspath_448_bioclinicalbert_RCC_subtyping_none_results.json └── zeroshot_utils ├── __init__.py └── zeroshot_path.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mahmoodlab/MI-Zero/HEAD/.gitignore -------------------------------------------------------------------------------- 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